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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSBRNA2T00006788001 |
Common Name | GSBRNA2T00006788001, LOC106361331 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
MIKC_MADS |
Protein Properties |
Length: 220aa MW: 25303.3 Da PI: 9.0397 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSBRNA2T00006788001 | genome | Genoscope | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 86.3 | 1.7e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krie+ + r+vtfskRr+g+lKKA+ELSvLCda+va i+fs++g+ly+++s
GSBRNA2T00006788001 9 KRIEDVTSRHVTFSKRRKGLLKKAHELSVLCDAQVAAIVFSQKGRLYDFAS 59
79***********************************************86 PP
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2 | K-box | 52 | 3.1e-18 | 83 | 177 | 9 | 100 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk...ekelqeenkaLr 95
++++ + l++e+a ++i+ Lq R+l+G+dL+s+s++eL+++ +++eksl+ +Rs+K +l + ie+l+ e+e+ +++ +Lr
GSBRNA2T00006788001 83 QKQQYVQDLKNEMAITMDKIKLLQLHCRKLMGQDLDSCSVEELKEITTKIEKSLTIVRSRKAKLNEDRIEKLKAEivaEREVLNDKSRLR 172
46677899****************999**********************************************85444899999999999 PP
K-box 96 kklee 100
+++ee
GSBRNA2T00006788001 173 QMFEE 177
99886 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 220 aa
Download sequence Send
to blast |
MVRGKIEIKR IEDVTSRHVT FSKRRKGLLK KAHELSVLCD AQVAAIVFSQ KGRLYDFASS 60 DMQKMIERCE IHRGEYFGAE RLQKQQYVQD LKNEMAITMD KIKLLQLHCR KLMGQDLDSC 120 SVEELKEITT KIEKSLTIVR SRKAKLNEDR IEKLKAEIVA EREVLNDKSR LRQMFEEQPL 180 WIQSRSLESE KSAPSCSCGN MNLSDVETDL SIGLPQSRV*
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expressed in the shoot apical meristem (SAM) during the vegetative phase and the floral transition. After floral transition, expressed in apical meristem (AM), inflorescence meristem (IM) and floral primordia. {ECO:0000269|PubMed:21609362}. |
Functional Description ? help
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Source |
Description |
UniProt | MADS-box transcription factor that acts with AGL42 and AGL71 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC189309 | 4e-94 | AC189309.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB034C07, complete sequence. |