PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00006786001

Common Name

GSBRNA2T00006786001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 221aa MW: 24411.6 Da PI: 8.0798

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00006786001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.7	9.8e-09	44	93	2	53
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIks 53 + h +Er+RR+++ + ++ Lr++lP ++K a+ + Av +Ik+ GSBRNA2T00006786001 44 KLLHRDIERQRRQEMATLYASLRSHLPLqY---IKGKRAVADHVNAAVGFIKD 93 6679************************66...99999999999999999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.04E-11	39	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.249	42	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.0E-6	44	93	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.5E-7	44	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.29E-6	47	93	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MDPYKNPNPK GYQRQRPFGS AGEGGSSGGS DMPHDIDDNK KKKKLLHRDI ERQRRQEMAT 60 LYASLRSHLP LQYIKGKRAV ADHVNAAVGF IKDTETRIKE LSARRDELSR EQTCQRSDPN 120 LARTGFELGK SDPASLIVQP CVNGFEVAVS SNSSGPDALP LSRVLEALQE LGLEVINSLT 180 TRVNERLMHT IQVEVNTFGC LDLASLQQKL VEDLILSPGY *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00006786001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013654258.1	1e-162	transcription factor bHLH126-like
Swissprot	Q9STJ6	1e-107	BH126_ARATH; Transcription factor bHLH126
TrEMBL	A0A078IQX5	1e-161	A0A078IQX5_BRANA; BnaA08g30870D protein
STRING	Bra010467.1-P	1e-161	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2968	27	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25410.1	1e-109	bHLH family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]