PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00006570001
Common NameGSBRNA2T00006570001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 239aa    MW: 26447.5 Da    PI: 10.5469
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00006570001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY26.31.5e-08124124
                         ---SS-EEEEEEE--TT-SS-EEE CS
                 WRKY  1 ldDgynWrKYGqKevkgsefprsY 24
                         ++Dg++WrKYGqK  kg+e+ r Y
  GSBRNA2T00006570001  1 MNDGCQWRKYGQKIAKGTEMFRRY 24
                         58*******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182902.22E-6124IPR003657WRKY domain
PROSITE profilePS508119.775158IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.3E-6224IPR003657WRKY domain
PfamPF031069.3E-7227IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MNDGCQWRKY GQKIAKGTEM FRRYVYSYLN LRRNTQPSTS TVSNRNGLRH FSRSLHAPLR  60
SLHDLHGLNF SLSGNRNIPK PKSPFLQTSS SGHPTVTLDL TTSSSSQQPF LSTLNSTNTV  120
MNWGGVGNRN EQYRAAYGNI STLQQSPYQH MIQTRIAGSS LDPFGRSSSY SPHPTQTNLD  180
HVGIKSITHQ VQYLPAETIK AITTNPNFQS ALATALSSIM GTDVKMDNVT RNEAEKSP*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00006570001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009149369.11e-120PREDICTED: probable WRKY transcription factor 61 isoform X1
RefseqXP_009149371.11e-121PREDICTED: probable WRKY transcription factor 61 isoform X2
RefseqXP_013724569.11e-120probable WRKY transcription factor 61
RefseqXP_022559662.11e-120probable WRKY transcription factor 61
SwissprotQ8VWV63e-88WRK61_ARATH; Probable WRKY transcription factor 61
TrEMBLA0A078FXX81e-176A0A078FXX8_BRANA; BnaC05g14560D protein
STRINGBra025693.1-P1e-120(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM126631729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18860.14e-81WRKY DNA-binding protein 61
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Gao R,Liu P,Yong Y,Wong SM
    Genome-wide transcriptomic analysis reveals correlation between higher WRKY61 expression and reduced symptom severity in Turnip crinkle virus infected Arabidopsis thaliana.
    Sci Rep, 2016. 6: p. 24604
    [PMID:27086702]