PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

ERF

Protein Properties

Length: 284aa MW: 30565.7 Da PI: 4.8811

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00006184001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56.3	8.1e-18	84	133	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+Wv+eIr+p++ + r++lg++ ta++Aa+a++ a+++++g GSBRNA2T00006184001 84 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTADMAARAHDVAALAIKG 133 69**998.******843...6*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	22.919	84	141	IPR001471	AP2/ERF domain
SMART	SM00380	1.4E-36	84	147	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	7.1E-31	84	142	IPR001471	AP2/ERF domain
Pfam	PF00847	4.0E-12	84	133	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.58E-21	84	142	IPR016177	DNA-binding domain
PRINTS	PR00367	6.1E-10	85	96	IPR001471	AP2/ERF domain
CDD	cd00018	1.18E-31	85	143	No hit	No description
PRINTS	PR00367	6.1E-10	107	123	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
METQINIQKS ASQVTFISAV SSSSASLSFS PTTSSSSSSS SSTSNLGNPK RKASQRSLSS 60 LAVQDLDDQG VKRRKSNGGD KHPTYRGVRM RSWGKWVSEI REPRKKSRIW LGTYPTADMA 120 ARAHDVAALA IKGTTAYLNF PELAGELPRP VTNSPKDIQA AATAAAVNWQ DSGGLHVGNS 180 DITEKIEAEP SGAVMAQSLS DSVVFSSDII TQELSETSCA STTSFVDKDS DEEKLFDLPD 240 LFNGGNEIGI IRNDTFWYDS STWQLCGADA GFRLEEPFFC LND*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	5e-17	79	142	9	73	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00006184001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013686648.1	0.0	ethylene-responsive transcription factor ERF034-like
Swissprot	Q8LBQ7	1e-115	ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBL	A0A078G2T0	0.0	A0A078G2T0_BRANA; BnaC04g03870D protein
TrEMBL	A0A3P6C5M9	0.0	A0A3P6C5M9_BRAOL; Uncharacterized protein
STRING	Bo4g024220.1	1e-180	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM185	28	283

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44940.1	1e-99	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]