PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00006113001 | ||||||||
Common Name | GSBRNA2T00006113001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 238aa MW: 27174 Da PI: 9.404 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.9 | 9.6e-32 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+i+fss+gklye+ GSBRNA2T00006113001 9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIVFSSRGKLYEFG 58 79**********************************************95 PP | |||||||
2 | K-box | 93.9 | 2.6e-31 | 67 | 156 | 10 | 99 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 e + +++qe+akLk+++e+L r++RhllGed++++ +k+Lq Le+qLe +l+ R++K+++++e++e+l+kke++l ++nk+L+ k+e GSBRNA2T00006113001 67 ERLNRHNWCQEVAKLKAKYESLVRTNRHLLGEDIGEMGVKQLQALERQLEAALTATRQRKTQVMMEEMEDLRKKERQLGDINKQLKIKFE 156 5567889*******************************************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 33.389 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.3E-42 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.15E-32 | 2 | 77 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.54E-44 | 2 | 73 | No hit | No description |
PRINTS | PR00404 | 9.6E-33 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.9E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.6E-33 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.6E-33 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 8.4E-29 | 70 | 155 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.999 | 71 | 161 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MGRGRVEMKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIVFSS RGKLYEFGSV 60 GVERTIERLN RHNWCQEVAK LKAKYESLVR TNRHLLGEDI GEMGVKQLQA LERQLEAALT 120 ATRQRKTQVM MEEMEDLRKK ERQLGDINKQ LKIKFEAGGH AFKSFQDFWP NSAASMAGDP 180 NNSKFPVQPS HPDSVDCNTE PFLQIGFQQH YYVQGEGSSV PKSNVACETN FVQDWFL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-20 | 1 | 73 | 1 | 73 | MEF2C |
5f28_B | 1e-20 | 1 | 73 | 1 | 73 | MEF2C |
5f28_C | 1e-20 | 1 | 73 | 1 | 73 | MEF2C |
5f28_D | 1e-20 | 1 | 73 | 1 | 73 | MEF2C |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.11446 | 0.0 | flower| leaf| seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Preferentially expressed in flowers. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Forms a heterodimer via the K-box domain with AG, that could be involved in genes regulation during floral meristem development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00006113001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ508409 | 0.0 | AJ508409.1 Brassica oleracea var. botrytis mRNA for MADS-box protein AGL6-a (agl6-a gene), short splice variant. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013691306.1 | 1e-172 | agamous-like MADS-box protein AGL6 | ||||
Swissprot | P29386 | 1e-155 | AGL6_ARATH; Agamous-like MADS-box protein AGL6 | ||||
TrEMBL | A0A078G0U2 | 1e-178 | A0A078G0U2_BRANA; BnaC04g04390D protein | ||||
STRING | Bo4g024840.1 | 1e-171 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4302 | 26 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45650.1 | 1e-145 | AGAMOUS-like 6 |
Publications ? help Back to Top | |||
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