PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00006041001
Common NameGSBRNA2T00006041001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 408aa    MW: 45747.5 Da    PI: 8.8398
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00006041001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like97.87.7e-3180133255
              G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          prlrWtpeLH rF++ave+ GG+++AtPk +l+lm+vkgL ++hvkSHLQ+YR+
  GSBRNA2T00006041001  80 PRLRWTPELHLRFLQAVEKFGGPDRATPKLVLQLMNVKGLCIAHVKSHLQMYRS 133
                          8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.22376136IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-2976134IPR009057Homeodomain-like
SuperFamilySSF466891.29E-1577135IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-2380135IPR006447Myb domain, plants
PfamPF002493.0E-1081132IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MRSSSQSSEN SKTCPSNNFK ETTKKEDNKD DENKDEEARS VDQIPSNNSY VEESGSHHHN  60
NDQIKKNGGS VRPYNRSKTP RLRWTPELHL RFLQAVEKFG GPDRATPKLV LQLMNVKGLC  120
IAHVKSHLQM YRSKKTDDPN QGNQGFSFEH GAGYTYNLGQ LPMLQSFDQR PSTSLGYGGG  180
SWTDHRRQVY RSPWRGLTAR DSTRTRPTLF SSQSGERFRE VSNSILDDTN KTISFRINSH  240
EAARASNGVG ESVPSIHRSF LEGMKTLNKS WGQSLSSNPN SSTASGPQDH IDTILSSNQR  300
ENPRVAEETE NVLKRKKLLL SDDCNKSVQD LDLSLSLKVH RTHNNLGDCL IEDEEKELDD  360
HEDIKGLSLS LSSSSSSKLG RDIRQEVQND PKKRKISVLV SPLDLTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A8e-1781135357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-1781135357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-1781135357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-1781135357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00301DAPTransfer from AT2G40260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00006041001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013634613.10.0PREDICTED: uncharacterized protein LOC106340283 isoform X2
TrEMBLA0A078FWQ20.0A0A078FWQ2_BRANA; BnaC04g04900D protein
STRINGBo4g025360.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93592136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.11e-180G2-like family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]