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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00005805001 | ||||||||
Common Name | GSBRNA2T00005805001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | CAMTA | ||||||||
Protein Properties | Length: 1020aa MW: 114072 Da PI: 6.2556 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 189 | 4.7e-59 | 48 | 165 | 2 | 118 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahsee 90 l+e ++rwl++ ei++iL n++k+++++e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+++vl+cyYah+e+ GSBRNA2T00005805001 48 LSEaQHRWLRPAEICEILRNYQKFHIASEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGED 137 45559************************************************************************************* PP CG-1 91 nptfqrrcywlLeeelekivlvhylevk 118 n++fqrrcyw+Le+el +iv+vhylevk GSBRNA2T00005805001 138 NENFQRRCYWMLEQELMHIVFVHYLEVK 165 *************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 86.826 | 44 | 170 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 8.0E-87 | 47 | 165 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 5.7E-52 | 50 | 164 | IPR005559 | CG-1 DNA-binding domain |
SuperFamily | SSF81296 | 1.64E-12 | 430 | 514 | IPR014756 | Immunoglobulin E-set |
SuperFamily | SSF48403 | 2.18E-19 | 608 | 722 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 3.8E-19 | 611 | 723 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 20.553 | 611 | 693 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 4.3E-8 | 612 | 687 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 6.18E-16 | 617 | 720 | No hit | No description |
PROSITE profile | PS50088 | 9.351 | 628 | 660 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 1500 | 628 | 657 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.301 | 661 | 693 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 4.7E-4 | 661 | 690 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 0.32 | 830 | 852 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 9.03E-8 | 831 | 880 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Pfam | PF00612 | 0.002 | 832 | 851 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.858 | 832 | 860 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0092 | 853 | 875 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.304 | 854 | 878 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 4.5E-4 | 856 | 875 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1020 aa Download sequence Send to blast |
MVVVCHVCRK LIITCERECY QLFTSGTVSR FKAFAVVVFA GTDIQQLLSE AQHRWLRPAE 60 ICEILRNYQK FHIASEPPNR PPSGSLFLFD RKVLRYFRKD GHNWRKKKDG KTVKEAHEKL 120 KVGSIDVLHC YYAHGEDNEN FQRRCYWMLE QELMHIVFVH YLEVKGNRIS SSGIKENNSN 180 SLSGSTSVNI DSTANTSSTL SPLCEDADSG NRDGWIHGNR VKESDSQRLV GVPALDASFE 240 NPLARYQNPP YNPLLTQTNP TNTGLMSVEG HLRNPLQNQV NWQIPVQDSL PLQKWPMDSH 300 GTDLALHENF GTFSSLIGSQ NQQQPIGGGS FQAPFTSVEA AYIPKFGPED LLYEASANQT 360 LPLRKSLLKK EDSLKKVDSF SRWVSNELAE MEDLQMQSSS GGIGWTSVET AAAASSLSPS 420 LSKDQRFTMI DFWPKWTQTD TEVEVMVIGT FLLSPQEVTS YSWACMFGEV EVPAEILVDG 480 VLCCRAPPHE VGQVPFYITC SDRFSCSEVR EFDFLPGSAR KLNTADIYGA YTNEASLHLR 540 FENLLARMSS AQEHNVFEDV GEKRRKISRI MLLKDEKESF LTSTAEKDLT EVEAKERLVR 600 EEFEDKLYLW LIQKVTEEGK GPNVLDEEGQ GVLHLAAALG YDWAIKPILA AGVSINFRDA 660 NGWSALHWAA YSGREDTVAL LVSLGADSGA LTDPSPELPL GKTASDLAYG NGHRGISGFL 720 AESSLTSYLE KLTVDGKEDA STDSSRAKAV QTVAERTATP MSYGDDSLTA VLNATQAADR 780 LHQVFRMQSF QRKQLSEIGE KNEFGLSDEL AVSFAAGKSK KAGGHSSGAA VHAAAVQIQK 840 KYRGWKKRKE FLLIRQRIVK IQAHVRGHQV RKQYRAIIWS VGLLEKIILR WRRKGSGLRG 900 FKRDTVTKAP EPVCAAPTQE DDYDFLKEGR KQTEERLQKA LTRVKSMAQY PEARAQYRRL 960 LTVVEGIREN EASSSSAMNN NNNNNNSNTE EAANYNEEDD LIDIDSLLDD DTFMSLAFE* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.21139 | 0.0 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, old leaves, petals, sepals, top of carpels, stigmas, stamen filaments, anthers and siliques, but not in pollen. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00005805001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013661269.1 | 0.0 | calmodulin-binding transcription activator 2-like | ||||
Swissprot | Q6NPP4 | 0.0 | CMTA2_ARATH; Calmodulin-binding transcription activator 2 | ||||
TrEMBL | A0A078FZU4 | 0.0 | A0A078FZU4_BRANA; BnaA09g06760D protein | ||||
STRING | Bra037769.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4082 | 24 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64220.2 | 0.0 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Publications ? help Back to Top | |||
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