PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00005653001
Common NameGSBRNA2T00005653001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 346aa    MW: 38065.2 Da    PI: 6.7374
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00005653001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA596e-19257291135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l
  GSBRNA2T00005653001 257 CSHCGVQKTPQWRAGPLGAKTLCNACGVRFKSGRL 291
                          *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169928.1E-9918345IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.991251287IPR000679Zinc finger, GATA-type
SMARTSM004011.9E-15251305IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.05E-13253313No hitNo description
Gene3DG3DSA:3.30.50.101.4E-14255289IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.24E-14256304No hitNo description
PROSITE patternPS003440257282IPR000679Zinc finger, GATA-type
PfamPF003208.5E-17257291IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MSGDQRGQGP TGKTVMERVE AALKSSVRKD MAFKTTLPVY EDFLAVTTAE DFSVDDFFDL  60
SNDSVFTEEE AEPKTHQEML HVSSQEPHDK GDALRLNNDG FGSLPPSELS VPTDELAELE  120
WLSHFVEDSF TEYSAPNLTG TPTEKPAWLT GDRKHPVTPV THDSCFKSPV PSKSRTKRNR  180
NGTNFWSLGS SSSSGPSSSN STSSSSSDPS NTWFSGAELL EPVFTSEKPP VPKKHKKRSA  240
ESVYSGQLVL QQPSRRCSHC GVQKTPQWRA GPLGAKTLCN ACGVRFKSGR LLPEYRPACS  300
PTFSSELHSN HHRKVMEMRR KKEPTDDNET GLNQLVQSPQ AVPSY*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00005653001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892250.0AC189225.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB011P07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009112294.10.0PREDICTED: GATA transcription factor 5
RefseqXP_009112295.10.0PREDICTED: GATA transcription factor 5
RefseqXP_009112296.10.0PREDICTED: GATA transcription factor 5
RefseqXP_009112297.10.0PREDICTED: GATA transcription factor 5
RefseqXP_018509710.10.0PREDICTED: GATA transcription factor 5
SwissprotQ9FH571e-171GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A078FW200.0A0A078FW20_BRANA; GATA transcription factor
TrEMBLM4F7W20.0M4F7W2_BRARP; GATA transcription factor
STRINGBra037173.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36982561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.21e-166GATA transcription factor 5
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]