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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00005560001 | ||||||||
Common Name | GSBRNA2T00005560001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 247aa MW: 28589.7 Da PI: 9.7758 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 61.9 | 7.3e-20 | 23 | 68 | 6 | 51 |
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +s + +++kR+ +++KKAeELS+LC++ev+vi ++s+g l+++++ GSBRNA2T00005560001 23 SSLKAASLAKRQVTVFKKAEELSILCGVEVSVICYGSDGALRTWPK 68 677889**************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 7.1E-4 | 4 | 69 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.27E-16 | 25 | 101 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 11.718 | 26 | 70 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 7.87E-15 | 26 | 91 | No hit | No description |
Pfam | PF00319 | 4.0E-12 | 28 | 66 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.3E-5 | 32 | 47 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.3E-5 | 47 | 68 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MSSSLSKTTK VSQFRPTLFQ KASSLKAASL AKRQVTVFKK AEELSILCGV EVSVICYGSD 60 GALRTWPKDR EKVKDMAVRY SQLSEVKRRI KQWDLNKFLE EVNKDPKKKN KKKKVKLESS 120 YKYPDWDPRF DNCSVEQLTE LIQSLECKQT IMQDRLRAVL ESQRQRNMYY MNMAEPTQMN 180 HLQQQLPNQD QSLAPLPNSL TVYQYPNMDT YSSFLGGQET GRNEFLSTNM IPYNSFNSNC 240 VNMFQN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00005560001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022547598.1 | 0.0 | agamous-like MADS-box protein AGL103 | ||||
Swissprot | Q9LSB2 | 1e-62 | AG103_ARATH; Agamous-like MADS-box protein AGL103 | ||||
TrEMBL | A0A078FZD4 | 0.0 | A0A078FZD4_BRANA; BnaA01g26610D protein | ||||
STRING | Bra037571.1-P | 1e-162 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM566 | 20 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18650.1 | 6e-57 | AGAMOUS-like 103 |
Publications ? help Back to Top | |||
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