PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00005221001

Common Name

GSBRNA2T00005221001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 500aa MW: 54641.5 Da PI: 7.4978

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00005221001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.8	0.00018	9	31	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C C + F++ L H+r+H GSBRNA2T00005221001 9 HICDTCRRQFPTLKALYGHQRVH 31 68*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.87E-6	7	37	No hit	No description
Pfam	PF13912	5.1E-6	8	31	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	8.9E-5	9	35	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	12.092	9	36	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	11	31	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence Send to blast
MMNNNNIVHI CDTCRRQFPT LKALYGHQRV HTRERELERQ LKRTKPSYPP GQGTSYGFSP 60 GTPLVTHNHY HPTLSNFNRP GISFGPFKSG GGGNRGDYPY PLFNGGIAMA PPANPYRSLT 120 QNTSYGSSSR VPLPSFRYNN SLGSANSIGR FSNNNSSQGE LSLELSLGPS KSMGDSNSNS 180 SSQGELSLEL SLGPSKSMGD SNSNSSSQGE LSLELSLGPS KSMGGSNNNS SAYPSFNCGV 240 TGGGNMYTNM PVRPLVPGYH FYRNNPIDSI TRNFPLSHPP PATNMMNRLV RPRASRFHFQ 300 GHNPLDTIIR NVPFSQPPPT TNIPDDNNVS GSSLIAKEKD KTVVLDDDDK DNVVIVDHDE 360 DQQEEVEAKS CGRGLIIRNV PLSQPPPTTN MNRLVRPRAS RFHFHGHNPL DSIIQNVPLS 420 QPHPTTNIPD DNNVSGSSLI AKEKDKTVVL DDDEKNDVVI VDHDEDQQEE VEAKSCGREN 480 KQIVISFHTR GKSLSSVLI*

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence Send to blast

MMNNNNIVHI CDTCRRQFPT LKALYGHQRV HTRERELERQ LKRTKPSYPP GQGTSYGFSP  60
GTPLVTHNHY HPTLSNFNRP GISFGPFKSG GGGNRGDYPY PLFNGGIAMA PPANPYRSLT  120
QNTSYGSSSR VPLPSFRYNN SLGSANSIGR FSNNNSSQGE LSLELSLGPS KSMGDSNSNS  180
SSQGELSLEL SLGPSKSMGD SNSNSSSQGE LSLELSLGPS KSMGGSNNNS SAYPSFNCGV  240
TGGGNMYTNM PVRPLVPGYH FYRNNPIDSI TRNFPLSHPP PATNMMNRLV RPRASRFHFQ  300
GHNPLDTIIR NVPFSQPPPT TNIPDDNNVS GSSLIAKEKD KTVVLDDDDK DNVVIVDHDE  360
DQQEEVEAKS CGRGLIIRNV PLSQPPPTTN MNRLVRPRAS RFHFHGHNPL DSIIQNVPLS  420
QPHPTTNIPD DNNVSGSSLI AKEKDKTVVL DDDEKNDVVI VDHDEDQQEE VEAKSCGREN  480
KQIVISFHTR GKSLSSVLI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00005221001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013619702.1	0.0	PREDICTED: rho GTPase-activating protein gacO-like
TrEMBL	A0A078IQR6	0.0	A0A078IQR6_BRANA; BnaC02g44670D protein
STRING	Bra022712.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM23552	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G27880.1	7e-16	C2H2 family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]