PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00004704001
Common NameGSBRNA2T00004704001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 288aa    MW: 32018.7 Da    PI: 5.0655
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00004704001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.5e-17103153256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 
                          +y+GVr+++ +g+++AeIrd       r+r++lg+f taeeAa a+++a+ +l+g+
  GSBRNA2T00004704001 103 KYRGVRQRR-WGSFAAEIRD----SaSRTRIWLGTFATAEEAAVAYDRAAIRLKGH 153
                          8*****998.**********....3235*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.8E-28103159IPR001471AP2/ERF domain
CDDcd000181.06E-28103159No hitNo description
PfamPF008471.8E-11103153IPR001471AP2/ERF domain
SMARTSM003803.7E-34103166IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-19103160IPR016177DNA-binding domain
PROSITE profilePS5103220.705103160IPR001471AP2/ERF domain
PRINTSPR003671.2E-9104115IPR001471AP2/ERF domain
PRINTSPR003671.2E-9126142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MERGSRRVKF TEHCTVKPVP AKPSNGSPRV VRISFTDPFA TDSSSSDEEE NDKACPTPRV  60
KRYVEEIRFG ETKPPRKARC KAEKKGCGGE RKAKADVSAN PIKYRGVRQR RWGSFAAEIR  120
DSASRTRIWL GTFATAEEAA VAYDRAAIRL KGHSALTNFL TPPSPGETPV IDLKTVSGCD  180
SGSQSLCSPT SVLRFNVKEE TELETAEVKP DVAGLFPDPY SLPELSLAGE YFWDSEFPPA  240
PLFVDEIEIH KPVPNRREDD EPEEFSFHLS GDFDATPWDV DNFFELD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-19104167670ATERF1
3gcc_A6e-19104167670ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.79500.0flower| leaf| seed
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00004704001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590289.10.0PREDICTED: ethylene-responsive transcription factor CRF6-like
SwissprotQ9M3743e-95CRF6_ARATH; Ethylene-responsive transcription factor CRF6
TrEMBLA0A078ILP50.0A0A078ILP5_BRANA; BnaC06g42850D protein
STRINGBo6g077880.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25782571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61630.14e-86cytokinin response factor 6
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]