PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00004123001 | ||||||||
Common Name | GSBRNA2T00004123001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WOX | ||||||||
Protein Properties | Length: 327aa MW: 35661 Da PI: 7.1488 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 50.5 | 3.5e-16 | 31 | 91 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++++eq+ +Le+ F++ +p +ee ++ k l ++ +++V++WFqNrR + ++ GSBRNA2T00004123001 31 RSRWSPKPEQILILESIFNSgMVNPPKEETVRIRKMLekfgKVGDANVFYWFQNRRSRSRR 91 89*****************99*************************************997 PP | |||||||
2 | Wus_type_Homeobox | 108 | 5.5e-35 | 30 | 93 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RW+P+peQi iLe++++sG+++P+kee+ ri+++Le++Gk++d+NVfyWFQNr++R+r++q GSBRNA2T00004123001 30 VRSRWSPKPEQILILESIFNSGMVNPPKEETVRIRKMLEKFGKVGDANVFYWFQNRRSRSRRRQ 93 589***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.84E-14 | 23 | 98 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.564 | 27 | 92 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-9 | 27 | 98 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.3E-6 | 29 | 96 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 6.3E-14 | 31 | 91 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MDQGQTPHST TGQSHSPSSS ASGSTSTEPV RSRWSPKPEQ ILILESIFNS GMVNPPKEET 60 VRIRKMLEKF GKVGDANVFY WFQNRRSRSR RRQRQLQAAA AAATTTTNTC DQTMMVSNNL 120 PQHSGSDLGF GGCSTSNYLF ASSSSYGAGC DNHSNNGMEN LLTMSGEMGY HGANQHHYNY 180 HSSNVESILC PSEQSSNYHY QQALLIIFPI LPNILYLRAR SIMVFINGVP TEVTSGGIDM 240 KVTFGEDLVL VNSSGVPLPT DQFGFLMHSL QHGEAYFLVI TLSLSLPPPS FPSPTLSLSL 300 SLSLSLSLSL SLSLSLSPHF DVENRK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00004123001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY251402 | 0.0 | AY251402.1 Arabidopsis thaliana WOX11 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009130381.1 | 1e-157 | PREDICTED: WUSCHEL-related homeobox 11-like | ||||
Swissprot | Q6X7J3 | 1e-141 | WOX11_ARATH; WUSCHEL-related homeobox 11 | ||||
TrEMBL | A0A078IP65 | 0.0 | A0A078IP65_BRANA; BnaA05g32800D protein | ||||
STRING | Bra031980.1-P | 1e-158 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2819 | 27 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03660.1 | 1e-122 | WUSCHEL related homeobox 11 |
Publications ? help Back to Top | |||
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