PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00004073001

Common Name

GSBRNA2T00004073001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Dof

Protein Properties

Length: 279aa MW: 31386.1 Da PI: 8.1801

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00004073001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.3	1.4e-37	43	101	2	60
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +++ ++cprC+s+ntkfCyynnysl+qPry+Ck+CrryWt+GG+lrnvPvGgg+rknkk GSBRNA2T00004073001 43 PQEPRNCPRCNSSNTKFCYYNNYSLAQPRYLCKSCRRYWTEGGSLRNVPVGGGSRKNKK 101 67899****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	7.5E-33	45	101	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.444	47	101	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	4.0E-24	48	99	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	49	85	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MDHHHYTHHD HDQYQHHQMT ITNNNSYNTI ITTPPPRQQQ HRPQEPRNCP RCNSSNTKFC 60 YYNNYSLAQP RYLCKSCRRY WTEGGSLRNV PVGGGSRKNK KLPLLQPNSS SSSPAKNLPD 120 LNPPFAFTSS SSTSTSSNPS KSTHQNNNDL SLSFSYPTMQ ERAQGHYGHF MDQAMSGGQN 180 CLFSAPMGMI QFRQDYGHDH NKTDIGFSLD SNKVDSNNQN NFLVNGGGSK LMFPYGDRDE 240 HHHDHERHDD GNKKRESGSS NELWSGIILG GDSGGPTW*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00004073001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009111400.1	1e-151	PREDICTED: dof zinc finger protein DOF4.1
Refseq	XP_009111401.1	1e-151	PREDICTED: dof zinc finger protein DOF4.1
Swissprot	Q9M161	1e-125	DOF41_ARATH; Dof zinc finger protein DOF4.1
TrEMBL	A0A078IP67	0.0	A0A078IP67_BRANA; BnaA09g52090D protein
STRING	Bra037401.1-P	1e-151	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14695	17	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00940.1	6e-99	Dof family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]