PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00003328001 | ||||||||
Common Name | GSBRNA2T00003328001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NF-YA | ||||||||
Protein Properties | Length: 286aa MW: 31425.9 Da PI: 10.0128 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 103.3 | 2.2e-32 | 163 | 219 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RR++Rakle+++kl +ksrkpylheSRh hAl+R+RgsgGrF GSBRNA2T00003328001 163 NEPIFVNAKQYHAILRRRKHRAKLEAQNKL-IKSRKPYLHESRHLHALKRARGSGGRF 219 59****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.3E-36 | 161 | 222 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.46 | 162 | 222 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 4.4E-27 | 164 | 219 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 4.5E-23 | 165 | 187 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 167 | 187 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 4.5E-23 | 196 | 219 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MQVFQSKDSS GSTWENSNIQ RSQSFSLTKN MMMMSTTQLP SSMKHSSLQL QNQDSSSTQS 60 TGESGGGEAA SFGEPNRYGC NSIVANTNLS GYNKSTTTSS MVSQEPVFPP TCGPPSWPLQ 120 CAETSHFNGF LASEYASQPT LSHLEMMGLV TSRVPLPHNI QENEPIFVNA KQYHAILRRR 180 KHRAKLEAQN KLIKSRKPYL HESRHLHALK RARGSGGRFL NTKKLQESSN SPLCSSSQMA 240 NGEGYSKSST TPSSSSDRNN MFQNTPFRFS GYPSTHHVSA LMSET* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 7e-19 | 164 | 224 | 3 | 63 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.19048 | 0.0 | seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant, except roots. Present in etiolated seedlings. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:17322342}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the blue light (BL) and abscisic acid (ABA) signaling pathways. {ECO:0000250, ECO:0000269|PubMed:17322342}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00003328001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC787683 | 1e-146 | KC787683.1 Brassica napus transcription factor subunit NF-YA5A (NF-YA5A) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013640470.1 | 0.0 | nuclear transcription factor Y subunit A-5-like | ||||
Refseq | XP_022576187.1 | 0.0 | nuclear transcription factor Y subunit A-5-like | ||||
Swissprot | Q9SYH4 | 1e-136 | NFYA5_ARATH; Nuclear transcription factor Y subunit A-5 | ||||
TrEMBL | A0A078IN83 | 0.0 | A0A078IN83_BRANA; BnaA06g01280D protein | ||||
TrEMBL | A0A397YTB2 | 0.0 | A0A397YTB2_BRACM; Uncharacterized protein | ||||
STRING | Bra037968.1-P | 1e-175 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11633 | 17 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54160.1 | 1e-118 | nuclear factor Y, subunit A5 |