PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00003098001 | ||||||||
Common Name | GSBRNA2T00003098001, LOC106351914 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 189aa MW: 21650.1 Da PI: 4.9136 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 105.5 | 6.8e-33 | 3 | 118 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrF Ptdeelvv++L++k++ +++ vi+++d+y ++PwdLp k+ +e ++wyf+s++ ++r+t++gyW + d+ GSBRNA2T00003098001 3 LPPGFRFFPTDEELVVHFLQRKASLLPCHP-GVIPDLDLYPYDPWDLPGKALGEGRQWYFYSRKT--------QQRVTSNGYWGSMEIDE 83 79*************************999.89***************87778899*****9974........4799************* PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++ ++++vg+kk ++fy g+ +kt+W+m+ey+l GSBRNA2T00003098001 84 PIFTSsTHKKVGIKKYFTFYLGN----SKTNWIMQEYSL 118 **99867888**********654....489*******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.45E-43 | 1 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 40.23 | 3 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.6E-22 | 4 | 118 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MNLPPGFRFF PTDEELVVHF LQRKASLLPC HPGVIPDLDL YPYDPWDLPG KALGEGRQWY 60 FYSRKTQQRV TSNGYWGSME IDEPIFTSST HKKVGIKKYF TFYLGNSKTN WIMQEYSLPD 120 SSSSSKRSSK RSGRGSTSSS HKTDYSKWVI CRVYEQNCNE EEDDDGTELS CLDEVFLSLD 180 DLDEVSLP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-34 | 1 | 162 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-34 | 1 | 162 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-34 | 1 | 162 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-34 | 1 | 162 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-34 | 1 | 162 | 18 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-34 | 1 | 162 | 18 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-34 | 1 | 162 | 18 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-34 | 1 | 162 | 18 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-34 | 1 | 162 | 18 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-34 | 1 | 162 | 18 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-34 | 1 | 162 | 18 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-34 | 1 | 162 | 18 | 174 | NAC domain-containing protein 19 |
4dul_A | 3e-34 | 1 | 162 | 15 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-34 | 1 | 162 | 15 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.24529 | 2e-68 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269|PubMed:15923329, ECO:0000269|PubMed:18069942}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00003098001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC966746 | 0.0 | KC966746.1 Brassica napus NAC transcription factor 104 (NAC104.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013647081.1 | 1e-139 | NAC domain-containing protein 104 | ||||
Swissprot | Q8GWK6 | 1e-113 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | A0A078IJS0 | 1e-137 | A0A078IJS0_BRANA; BnaA06g23510D protein | ||||
STRING | Bra024306.1-P | 1e-135 | (Brassica rapa) | ||||
STRING | Bo3g101220.1 | 1e-134 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3674 | 28 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 1e-100 | xylem NAC domain 1 |
Link Out ? help Back to Top | |
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Entrez Gene | 106351914 |
Publications ? help Back to Top | |||
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