PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00003061001
Common NameGSBRNA2T00003061001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 493aa    MW: 57060.2 Da    PI: 4.3891
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00003061001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM44.35.8e-14161414128
                  NAM   4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                          G++F+P d+el++eyL +k+egk+ ++   i+  d+y+ ePw L++ + +        + ++     +++ +r  +sg W+  gk+    
  GSBRNA2T00003061001  16 GIQFQPYDDELINEYLIPKLEGKPRRE---ITMKDVYSKEPWLLDHPMGS------IGCGQNV----KRKITRDDDSGSWRVNGKEDITD 92 
                          99**********************766...9999**********843322......2223222....3456788889********66555 PP

                  NAM  94 skkgelvglkktLvfy.......kgrapkge.........ktdWvmheyrl 128
                          +++++++g k+tL+f        k  +++g          + +W+m ey l
  GSBRNA2T00003061001  93 KETKKTIGEKQTLAFVnskvnnkK--QKSGDgtscnvsrdSESWIMTEYML 141
                          558999**********77666441..22222334444444678****9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-167157IPR003441NAC domain
PROSITE profilePS5100519.05613159IPR003441NAC domain
PfamPF023657.8E-1216140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MYEYNDMYEY NDEDGGIQFQ PYDDELINEY LIPKLEGKPR REITMKDVYS KEPWLLDHPM  60
GSIGCGQNVK RKITRDDDSG SWRVNGKEDI TDKETKKTIG EKQTLAFVNS KVNNKKQKSG  120
DGTSCNVSRD SESWIMTEYM LPEEKGKFHE LVICKIHVIK NSKKKDDDHH EVCTSSNHHH  180
YVSVLASSFS AQQLQHPINE AQLHEASTYL NHIDSSTSEQ PPINIADRGT LLAPFLEQQP  240
INIVDHAPLL APFLEQQQPI NIFDHGTFLT PNYLEQQPIN IFDHGTFLSP YLEQQPMNIF  300
DHGTFLTPNY LEQQQPINIF YHGSFLTPNY LEQQPMNLYD ESVPASFSFE QQPNNVICKI  360
QENNKKDDYE AFIPHHYEFL ADSFAMQQPV NEAHRHVAEI PLIGSENNDQ VFEDSRQVSE  420
KDEQLYIDAP IEEEGREWFQ GFVNELKTMN TSSMPMEEDV DTMMIYDTPW IDQDSLDQYA  480
TLRPQERSES EQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00003061001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018453519.10.0PREDICTED: uncharacterized protein LOC108824593
TrEMBLA0A078IPC50.0A0A078IPC5_BRANA; BnaA10g11790D protein
STRINGBra002605.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26071358
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]