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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00002998001 | ||||||||
Common Name | GSBRNA2T00002998001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 338aa MW: 37987.9 Da PI: 6.3158 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 176.8 | 6e-55 | 21 | 149 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrFhPtdee+++ yLk+kv ++++++ ++ e+d++k+ePwdLp k +k +eke yfF++rd+ky+tg r+nrat+sgyWkatgkd GSBRNA2T00002998001 21 LPPGFRFHPTDEEIISSYLKEKVLDSRFTA-VAMGEADLNKCEPWDLPsKLAKMGEKEFYFFCQRDRKYPTGMRTNRATESGYWKATGKD 109 79*************************999.67***************666677999********************************* PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 ke+++ kg lvg+kktLvfy+grap+gekt+Wvmheyrle GSBRNA2T00002998001 110 KEIFKGKGCLVGMKKTLVFYRGRAPRGEKTNWVMHEYRLE 149 *****9********************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.67E-61 | 18 | 174 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.072 | 21 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.1E-29 | 22 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MAVVVESGVV LNHGGDELVD LPPGFRFHPT DEEIISSYLK EKVLDSRFTA VAMGEADLNK 60 CEPWDLPSKL AKMGEKEFYF FCQRDRKYPT GMRTNRATES GYWKATGKDK EIFKGKGCLV 120 GMKKTLVFYR GRAPRGEKTN WVMHEYRLEG IYSYHNLPKT ARDDWVVCRV FHKNNPSTTT 180 QQMTRIPMED LARTDSLENI DHFLDFSSLP PLIDPSFTGQ PNFKPINPPT YDISSPIQPH 240 PFNSSYQPIF NHQGFGSASG SGSGSTYNNN NKEMVKMEQS LVSVSQETCL SSDVNATTTA 300 EVSSGPVMKQ EMSMMGMVNG SKSYEDLCDL RGILWDY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-51 | 19 | 175 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-51 | 19 | 175 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-51 | 19 | 175 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-51 | 19 | 175 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-50 | 19 | 175 | 18 | 170 | NAC domain-containing protein 19 |
3swm_B | 1e-50 | 19 | 175 | 18 | 170 | NAC domain-containing protein 19 |
3swm_C | 1e-50 | 19 | 175 | 18 | 170 | NAC domain-containing protein 19 |
3swm_D | 1e-50 | 19 | 175 | 18 | 170 | NAC domain-containing protein 19 |
3swp_A | 1e-50 | 19 | 175 | 18 | 170 | NAC domain-containing protein 19 |
3swp_B | 1e-50 | 19 | 175 | 18 | 170 | NAC domain-containing protein 19 |
3swp_C | 1e-50 | 19 | 175 | 18 | 170 | NAC domain-containing protein 19 |
3swp_D | 1e-50 | 19 | 175 | 18 | 170 | NAC domain-containing protein 19 |
4dul_A | 9e-51 | 19 | 175 | 15 | 167 | NAC domain-containing protein 19 |
4dul_B | 9e-51 | 19 | 175 | 15 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.16169 | 1e-151 | microspore-derived embryo |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00002998001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP641357 | 0.0 | KP641357.1 Brassica napus NAC transcription factor 87.1 (NAC87.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009131648.1 | 0.0 | PREDICTED: NAC domain-containing protein 92-like | ||||
Swissprot | Q9FK44 | 0.0 | NAC87_ARATH; NAC domain-containing protein 87 | ||||
TrEMBL | A0A078IQ52 | 0.0 | A0A078IQ52_BRANA; BnaA03g07000D protein | ||||
STRING | Bra006449.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2269 | 27 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.2 | 0.0 | Arabidopsis NAC domain containing protein 87 |
Publications ? help Back to Top | |||
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