PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00001962001
Common NameGSBRNA2T00001962001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 102aa    MW: 11033.6 Da    PI: 11.1145
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00001962001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.43.4e-08555146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                         ++ WT+ E   l  +v+ +G g W+ I +        k R+  ++k++w++
  GSBRNA2T00001962001  5 KQMWTPKEVTALRAGVRAYGIGKWRGILSDSKfgralKARSNVDLKDKWRN 55
                         678**********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.96E-14363IPR009057Homeodomain-like
PROSITE profilePS500906.679457IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.0E-12456IPR009057Homeodomain-like
CDDcd116601.92E-16656No hitNo description
PfamPF139214.6E-5858No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MGGRKQMWTP KEVTALRAGV RAYGIGKWRG ILSDSKFGRA LKARSNVDLK DKWRNISAAT  60
FGSRKKKVLA IVAVANDNDG EQEIVPASPA NGDNEGLFAR F*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15060584}.
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand. {ECO:0000269|PubMed:19102728}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00001962001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603747.12e-65PREDICTED: telomere repeat-binding factor 3-like isoform X1
RefseqXP_013603748.11e-65PREDICTED: telomere repeat-binding factor 3-like isoform X2
RefseqXP_013752321.22e-65telomere repeat-binding factor 3-like
SwissprotQ9M2X31e-23TRB3_ARATH; Telomere repeat-binding factor 3
TrEMBLA0A078FT772e-66A0A078FT77_BRANA; BnaC08g21430D protein
TrEMBLA0A3P6GTB02e-64A0A3P6GTB0_BRAOL; Uncharacterized protein
STRINGBo8g079140.15e-65(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49850.16e-26telomere repeat binding factor 3
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Denis E, et al.
    WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis.
    Plant J., 2017. 90(3): p. 560-572
    [PMID:28218997]
  3. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]