PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00001941001

Common Name

GSBRNA2T00001941001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 348aa MW: 40052.4 Da PI: 8.4787

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00001941001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	31.8	3.6e-10	257	325	1	69
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkek..wenlnkrykkikegek 69 rW+++ev+aLi+ r+++ee+ + + + W++vs+km+erg + +p+ k + +e+l k yk ek GSBRNA2T00001941001 257 RWPHEEVQALIDSRSQVEEKTGFH--RVAIWDDVSAKMKERGKKTQPEHRKTRsyFEKLGKLYKTNSVVEK 325 8*****************9998..899**********998876554444*******8766655 PP

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MELLAGNCRK RPADDFAEDV DPFGSSEWMY RSRSLRTQGN DDALATLADL ASPPQKQKPI 60 RCVVKPPSED RQHPLDILAG SLDRLPPEMG FLGDGGCFEA PWDEVEMEVR GRVSRRDGVS 120 LSSSADSDSD SFQGGLKGKR KRKTREKMDH FVEKLVGSMM KRQEKMHNQL INVMEKMEHE 180 RTLSEEAWRQ QEIERMKQNE EAQMREMSHS SSIIPFIKSV IGEEEDIEMP NLTIPLPKQS 240 AHQRQRDVKF VFPSGRRWPH EEVQALIDSR SQVEEKTGFH RVAIWDDVSA KMKERGKKTQ 300 PEHRKTRSYF EKLGKLYKTN SVVEKEEWRG GGGSSVRLRF TFFFVRV*

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MELLAGNCRK RPADDFAEDV DPFGSSEWMY RSRSLRTQGN DDALATLADL ASPPQKQKPI  60
RCVVKPPSED RQHPLDILAG SLDRLPPEMG FLGDGGCFEA PWDEVEMEVR GRVSRRDGVS  120
LSSSADSDSD SFQGGLKGKR KRKTREKMDH FVEKLVGSMM KRQEKMHNQL INVMEKMEHE  180
RTLSEEAWRQ QEIERMKQNE EAQMREMSHS SSIIPFIKSV IGEEEDIEMP NLTIPLPKQS  240
AHQRQRDVKF VFPSGRRWPH EEVQALIDSR SQVEEKTGFH RVAIWDDVSA KMKERGKKTQ  300
PEHRKTRSYF EKLGKLYKTN SVVEKEEWRG GGGSSVRLRF TFFFVRV*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.17274	1e-157	seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00001941001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC236785	0.0	AC236785.1 Brassica napus clone JBnB015G17, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013598760.1	0.0	PREDICTED: trihelix transcription factor GT-2-like
TrEMBL	A0A078FXF9	0.0	A0A078FXF9_BRANA; BnaA06g35350D protein
STRING	Bra024925.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9411	27	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47660.1	8e-63	Trihelix family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]