PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00001475001
Common NameGSBRNA2T00001475001, LOC106385800
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family AP2
Protein Properties Length: 432aa    MW: 47492.1 Da    PI: 8.5998
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00001475001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.3e-17118167155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  GSBRNA2T00001475001 118 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAVKFRG 167
                          78*******************......55***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.87E-11118174No hitNo description
SuperFamilySSF541712.03E-15118175IPR016177DNA-binding domain
PfamPF008471.0E-8118167IPR001471AP2/ERF domain
PROSITE profilePS5103217.359119175IPR001471AP2/ERF domain
SMARTSM003801.3E-30119181IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.2E-17119175IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MMLDLNLDVV SAESTHMDES VTSNSSVVNA EASSCIDGEE ELCSTRAAVK FQFEILKGRG  60
GEEEEEDRKT KEFFPVAQSS RSSVDISFQR GTQGGDFVQP PPAQPVKKSR RGPRSKSSQY  120
RGVTFYRRTG RWESHIWDCG KQVYLGGFDT AHAAARAYDR AAVKFRGLEA DINFIISDYE  180
EDLKQMANLS KEEVVQVLRR QSSGFSRSNS RYQGVSLQKI GGWGAQMKQF NGNMAVASLI  240
EPHASRIIPE SANVKLDLSL GISLSLGDGP KQKDKAPRRH HPPNSMMDNH MTAATCDTPF  300
NLLKRGSDHL LNRHVPHPSA FFSPMERTPE KGFMSPSPQS FLARTWQAQD QFSGGTATTA  360
IASPLYSNAA SSGFSPSATR PPPSSTASAT LHPSQPFLNL NMPGLYVIHP SDYSSQQHHH  420
HLMNRSQPPP P*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.177160.0seed
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00001475001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2347370.0AC234737.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH010D15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013681156.10.0AP2-like ethylene-responsive transcription factor TOE2
SwissprotQ9LVG20.0TOE2_ARATH; AP2-like ethylene-responsive transcription factor TOE2
TrEMBLA0A078FBF90.0A0A078FBF9_BRANA; BnaA02g06490D protein
STRINGBra020262.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128361730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60120.11e-174target of early activation tagged (EAT) 2
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]