![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00001377001 | ||||||||
Common Name | GSBRNA2T00001377001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 280aa MW: 31989.9 Da PI: 6.7934 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 64.3 | 2.1e-20 | 95 | 154 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 Dg+ WrKYGqK++k+s++ rsYYrC+++ C ++k+ ++ +++p v +tY g+H+++ GSBRNA2T00001377001 95 DGFLWRKYGQKTIKQSKHQRSYYRCSYNidhACGARKHEQKIKDNPPVYRTTYFGHHTCN 154 9**************************99999**************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 18.762 | 88 | 156 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.7E-20 | 90 | 154 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.53E-20 | 92 | 155 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.7E-29 | 93 | 155 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-20 | 95 | 153 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 280 aa Download sequence Send to blast |
MAKTSTLNSM NTSHEKAVQA ILYGQSCAKR LKLQLDHPMA DGRSDNFFSD LSSRDSSSSS 60 SPPLPQRSHS KKRKNNNTNS SENWRHDSPD PNYYDGFLWR KYGQKTIKQS KHQRSYYRCS 120 YNIDHACGAR KHEQKIKDNP PVYRTTYFGH HTCNINHNQD AGLTTVGDSV NDLENSRMIW 180 FGEDLDQEKE SHTSGLSVSV KHEEGSIKEE TVDQYRHRGI TSHDKDCQNV IKENHQPSPS 240 GSYTPPSSSG SEIDMFDSDL LVEDLDLWDR YDMYDFGLR* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 1e-15 | 95 | 153 | 10 | 68 | OsWRKY45 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 65 | 73 | QRSHSKKRK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00001377001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013733380.1 | 1e-176 | probable WRKY transcription factor 38 | ||||
Refseq | XP_013733385.1 | 1e-176 | probable WRKY transcription factor 38 | ||||
Swissprot | Q8GWF1 | 1e-100 | WRK38_ARATH; Probable WRKY transcription factor 38 | ||||
TrEMBL | A0A078F7S8 | 0.0 | A0A078F7S8_BRANA; BnaA02g05730D protein | ||||
STRING | Bra020197.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13673 | 17 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G22570.1 | 6e-76 | WRKY DNA-binding protein 38 |
Publications ? help Back to Top | |||
---|---|---|---|
|