PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00001356001
Common NameGSBRNA2T00001356001, LOC106384719, LOC106384726
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 344aa    MW: 38501.9 Da    PI: 4.9867
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00001356001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.84.4e-49221472128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                           pGf+F+Ptd el+++yLk+k++g + ++ evi+e+diy++ePwdLp k++ ++++ew+fF+ r kky++g++++ratk gyWkatgk++
  GSBRNA2T00001356001  22 FPGFKFSPTDVELISYYLKRKMDGLERSV-EVIPETDIYNFEPWDLPdKSIVKSDTEWFFFCARGKKYPHGSQNRRATKMGYWKATGKER 110
                          69************************999.99***************778888999********************************** PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +v+s +++++g+k+tLvf+ grapkge+t+W+mhey +
  GSBRNA2T00001356001 111 DVKS-SSQVIGTKRTLVFHIGRAPKGERTEWLMHEYCM 147
                          ****.999****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.41E-5411163IPR003441NAC domain
PROSITE profilePS5100551.46521164IPR003441NAC domain
PfamPF023651.4E-2423146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009626Biological Processplant-type hypersensitive response
GO:0009910Biological Processnegative regulation of flower development
GO:0034976Biological Processresponse to endoplasmic reticulum stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005783Cellular Componentendoplasmic reticulum
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MEAEAMGGFK DTAASVEAAT VFPGFKFSPT DVELISYYLK RKMDGLERSV EVIPETDIYN  60
FEPWDLPDKS IVKSDTEWFF FCARGKKYPH GSQNRRATKM GYWKATGKER DVKSSSQVIG  120
TKRTLVFHIG RAPKGERTEW LMHEYCMKGV SMDDALVVCR LRRNKEFHTS TSQKAPEPDL  180
PTEKHMVMQN GGAASSGSLT DWDSMVDFYL AGESGEELLN EMAETSKNLQ VQTEDDFFAD  240
ILKDEIINVD EAVTTGNLAN EVPTLESASK AIRVLPLPSM IDKQMASLLE ERPSEQKKCK  300
GSSGTDQLSS CFVGIYSIKT VNRARWDVII CLVALIVMFF CLE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-412317419171NO APICAL MERISTEM PROTEIN
1ut4_B1e-412317419171NO APICAL MERISTEM PROTEIN
1ut7_A1e-412317419171NO APICAL MERISTEM PROTEIN
1ut7_B1e-412317419171NO APICAL MERISTEM PROTEIN
3swm_A2e-412317422174NAC domain-containing protein 19
3swm_B2e-412317422174NAC domain-containing protein 19
3swm_C2e-412317422174NAC domain-containing protein 19
3swm_D2e-412317422174NAC domain-containing protein 19
3swp_A2e-412317422174NAC domain-containing protein 19
3swp_B2e-412317422174NAC domain-containing protein 19
3swp_C2e-412317422174NAC domain-containing protein 19
3swp_D2e-412317422174NAC domain-containing protein 19
4dul_A1e-412317419171NAC domain-containing protein 19
4dul_B1e-412317419171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in plant cell division. {ECO:0000269|PubMed:16803883}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00001356001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9747640.0KF974764.1 Brassica napus NAC transcription factor 89-1 (NAC89-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009126534.10.0PREDICTED: NAC domain-containing protein 89-like
SwissprotQ94F580.0NAC89_ARATH; NAC domain-containing protein 89
TrEMBLA0A078FB970.0A0A078FB97_BRANA; BnaA02g05540D protein
TrEMBLA0A398AB340.0A0A398AB34_BRACM; Uncharacterized protein
STRINGBra020182.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43092356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22290.10.0NAC domain containing protein 89
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]