PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00000785001

Common Name

GSBRNA2T00000785001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 348aa MW: 39459.6 Da PI: 6.2384

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00000785001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.1	4.2e-05	228	271	8	55
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er R +ri + + L +llP+ + s iL + v+++k Lq GSBRNA2T00000785001 228 TERERKQRIDDNIKALAKLLPHE----VEEDSSEVILNEIVDHVKLLQ 271 69******************9....68899999******99998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.83E-6	218	279	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.2E-6	220	278	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	8.988	220	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MNFNSVFQSL TELFPQFDER ILRTVAREHP TDADEAAAVV ISEVVPLFPQ EWEVHVPKRK 60 LHHLPPCKVE PETQHEDALS QWLHPSHLPQ SYLALLNEEE EEEKATPDLK PSLDYAVKKV 120 VLPSRDAAAG ARREVRTIYS ASNKTASSVV KPSIRVQSQT NNEQLSGSSS KAPVAGRSQR 180 KAAHPWSNYS EKLRSWKKRS SDFSQLHGQC KYVPSWQSNQ SKCKSYTTER ERKQRIDDNI 240 KALAKLLPHE VEEDSSEVIL NEIVDHVKLL QLEMKELSLN RLGGEPISHP MTFIEGFGHY 300 IHHEEMMTKP LEEMMEDLLA NDPDAAARLL ESKGLYLMPL SSVQDLC*

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MNFNSVFQSL TELFPQFDER ILRTVAREHP TDADEAAAVV ISEVVPLFPQ EWEVHVPKRK  60
LHHLPPCKVE PETQHEDALS QWLHPSHLPQ SYLALLNEEE EEEKATPDLK PSLDYAVKKV  120
VLPSRDAAAG ARREVRTIYS ASNKTASSVV KPSIRVQSQT NNEQLSGSSS KAPVAGRSQR  180
KAAHPWSNYS EKLRSWKKRS SDFSQLHGQC KYVPSWQSNQ SKCKSYTTER ERKQRIDDNI  240
KALAKLLPHE VEEDSSEVIL NEIVDHVKLL QLEMKELSLN RLGGEPISHP MTFIEGFGHY  300
IHHEEMMTKP LEEMMEDLLA NDPDAAARLL ESKGLYLMPL SSVQDLC*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00000785001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009150589.1	0.0	PREDICTED: uncharacterized protein LOC103873934 isoform X1
TrEMBL	A0A078FAH1	0.0	A0A078FAH1_BRANA; BnaA06g24010D protein
STRING	Bo3g100520.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12956	16	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30980.1	3e-14	LJRHL1-like 2

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]