PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00000336001
Common NameGSBRNA2T00000336001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 324aa    MW: 36837.1 Da    PI: 10.0999
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00000336001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.17.5e-143672293
                         H.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                   B3 22 faeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
                         f+++h  g  +e +  +tl++  s ++Wevk+  ++++    lt+GW++F++ +gL++gD+v+F++dg+     +
  GSBRNA2T00000336001  3 FFSKHirGTTNEDNAVVTLTSdASDKTWEVKM--DGRR----LTRGWQNFANGHGLRVGDIVIFRRDGD--L--L 67
                         6677777545556667777775888*******..9998....***********************6653..2..3 PP
2B370.81.8e-22112206399
                          EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                   B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                           + +++++l++++l lp+ f +++g+ +++  +++l +e+g+ W+v ++y k+ gr+++++GW++F+++n+ +++D ++Fkl++ +++++
  GSBRNA2T00000336001 112 VARVTASNLSRDMLFLPRGFSRSNGLTNRK-CEIILLNEDGKPWKVFMSYHKTHGRVYIRTGWRRFCRQNRRRSNDLLTFKLVE-TGTKP 199
                          5668999*****************998655.6*************************************************998.88889 PP

                          EEEEE-S CS
                   B3  93 vvkvfrk 99 
                          v++++++
  GSBRNA2T00000336001 200 VLQLCSS 206
                          *999975 PP
3B3536.2e-17224312191
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f++ ++++++l+++ l+lp  f++++g+ +++  +++l d+ g + +  l+ +++ g++ ++kGW+e +kang+k+g++++++l++++++
  GSBRNA2T00000336001 224 FLTLTLTPYSLRKSKLCLPAAFLKSNGITNAR--KIILVDRYGIKRTTSLKPDNNNGAMRMGKGWRELCKANGVKAGESFTLELIKEEGE 311
                          67788899******************988555..8********999999988********************************986444 PP

                          . CS
                   B3  91 e 91 
                          +
  GSBRNA2T00000336001 312 T 312
                          3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.957176IPR003340B3 DNA binding domain
SMARTSM010193.5E-8376IPR003340B3 DNA binding domain
PfamPF023626.9E-9665IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.7E-171483IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.84E-151682IPR015300DNA-binding pseudobarrel domain
CDDcd100179.90E-111873No hitNo description
Gene3DG3DSA:2.40.330.101.6E-22104206IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-23106209IPR015300DNA-binding pseudobarrel domain
CDDcd100171.79E-16110205No hitNo description
SMARTSM010192.3E-25110207IPR003340B3 DNA binding domain
PROSITE profilePS5086314.424110206IPR003340B3 DNA binding domain
PfamPF023624.7E-21112206IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.6E-18217321IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-18221319IPR015300DNA-binding pseudobarrel domain
CDDcd100171.53E-15223311No hitNo description
PROSITE profilePS5086312.59224320IPR003340B3 DNA binding domain
SMARTSM010191.1E-20224323IPR003340B3 DNA binding domain
PfamPF023621.9E-15224314IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MTFFSKHIRG TTNEDNAVVT LTSDASDKTW EVKMDGRRLT RGWQNFANGH GLRVGDIVIF  60
RRDGDLLFHV TSFGPSCCQI LYDDVIQVFS DSEKYHQDTR EEGSPSDNSC FVARVTASNL  120
SRDMLFLPRG FSRSNGLTNR KCEIILLNED GKPWKVFMSY HKTHGRVYIR TGWRRFCRQN  180
RRRSNDLLTF KLVETGTKPV LQLCSSVYNR DCLRDSSSTS QDRFLTLTLT PYSLRKSKLC  240
LPAAFLKSNG ITNARKIILV DRYGIKRTTS LKPDNNNGAM RMGKGWRELC KANGVKAGES  300
FTLELIKEEG ETATHLLKFC TKV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00000336001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009146778.10.0PREDICTED: B3 domain-containing protein REM10-like
TrEMBLA0A078F9V00.0A0A078F9V0_BRANA; BnaA05g27890D protein
TrEMBLM4F1C30.0M4F1C3_BRARP; Uncharacterized protein
STRINGBra034869.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31615.14e-74B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]