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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GRMZM6G613247_P01 |
Common Name | Zm.32398 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family |
HRT-like |
Protein Properties |
Length: 387aa MW: 42955.8 Da PI: 10.2969 |
Description |
HRT-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GRMZM6G613247_P01 | genome | MaizeSequence | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HRT-like | 45.9 | 9.4e-15 | 148 | 177 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31
+CGv+ledG +C ++Pv+gRKRC HKG+R+
GRMZM6G613247_P01 148 VCGVLLEDG-FCLEHPVHGRKRCSLHKGKRV 177
7********.7*******************7 PP
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2 | HRT-like | 50.1 | 4.6e-16 | 349 | 378 | 1 | 30 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30
+CG++++dGs C++ P++gRKRC+ HKG+R
GRMZM6G613247_P01 349 TCGARTSDGSRCMNMPIEGRKRCALHKGQR 378
7****************************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 387 aa
Download sequence Send
to blast |
MDNKQEAEKT EALLLRVFDY AWNKLQNGAC RRQEILHKLE LRAANHRSLL SRVSDMKQKI 60 FGQKAGINIK GSGPANTSPS IIKSMLPRVR TIVRFRPQLV NPNNSEGGIT GIPYANRQAH 120 RRKSKGYQVK KFDVTKRRTV PIHDSNSVCG VLLEDGFCLE HPVHGRKRCS LHKGKRVKGS 180 PKSSPTSHPC QVGIAITEFC LTEDLDSSVP KQESEIRPKN MSTTLKEPQR QSDNLESQKV 240 NTGEASTEDG TQEVSRDACI LEEKAFFHAD SESQEQQPSG RMWFELLKSQ RKPASAHPSR 300 RGLGSQITAM TDNRSCKMVS IAGMERTEKD SGVEVTAASF SRSSGWPCTC GARTSDGSRC 360 MNMPIEGRKR CALHKGQRAA FPPTPSA
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HQ858757 | 0.0 | HQ858757.1 Zea mays clone UT1499 HRT transcription factor mRNA, partial cds. |