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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GRMZM5G887286_P01 |
Common Name | Zm.125586 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family |
C2H2 |
Protein Properties |
Length: 300aa MW: 34212.3 Da PI: 8.0404 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GRMZM5G887286_P01 | genome | MaizeSequence | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 12.5 | 0.00045 | 103 | 125 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS
zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23
+C+ C+++++++ +L H + H
GRMZM5G887286_P01 103 SCSVCSRVYPTSRLLSIHVSEtH 125
6*****************99877 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 300 aa
Download sequence Send
to blast |
MQKKPDDAME EEAAAAPGPE IGFWLAARRR LAPEDPFFAA GDLERELLAK HLALDLSEDD 60 RNQLEKMEVA STCTVFCPIA GCGAHLDCLE EFEDHYVTRH TASCSVCSRV YPTSRLLSIH 120 VSETHDSYFQ AKVARGFPMY ECLVEGCGMK LKSYKSRQQH LIDKHQFPKS FEFFKKARDS 180 QRQRQKSQRR QTAHKGEETR DNSMDVDGKG ARQTNRRYRL KQHDHSEPKE NKQQHKEAQE 240 DEMEVEQKID ELTSAVSRLS TADSTPSSVT FGHRRSRGLT FVPRSIRQNK QAALPAGSNK
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Expression -- UniGene
? help Back to Top |
UniGene ID |
E-value |
Expressed in |
Zm.19535 | 0.0 | cell lignification| endosperm| meristem| pollen| shoot| tassel |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU959494 | 0.0 | EU959494.1 Zea mays clone 218341 zinc finger protein 511 mRNA, complete cds. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT5G14140.1 | 9e-93 | zinc ion binding;nucleic acid binding;zinc ion binding |