PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G883760_P01
Common NameLOC103636710, Zm.147617
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 178aa    MW: 18650.9 Da    PI: 8.7875
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G883760_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.8e-054567123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C+ Cgk F ++  L  H  +H
  GRMZM5G883760_P01 45 FRCSVCGKAFASHQALGGHKASH 67
                       89*************99998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.5E-114469IPR007087Zinc finger, C2H2
SMARTSM003550.0134567IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.28E-745119No hitNo description
Gene3DG3DSA:3.30.160.602.8E-44568IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.7834572IPR007087Zinc finger, C2H2
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
PfamPF139122.6E-1196120IPR007087Zinc finger, C2H2
SMARTSM003550.6597119IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.41197119IPR007087Zinc finger, C2H2
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MATTHDDCVS LCLMALAAAG GGGMTTQSYA PSTAAWTTQE CELRFRCSVC GKAFASHQAL  60
GGHKASHRKP THLQTQQASS SSVTTSSAGS GGGQGRHRCS VCHRSFATGQ ALGGHKRCHY  120
WDGLSVSLTA SGSGSTVKGF DLNLMPATRW GEEEEVQSPL PIKKRRLSGP SLDLSLTI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.95561e-96meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G883760
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in abscisic acid (ABA) signaling. Required for the regulation of the cross-talk between NADPH oxidase, hydrogen peroxide and MAP kinase in ABA signaling. Regulates the expression of the NADPH oxidase genes RBOHB and RBOHE, and the MAPK genes MPK1, MPK4, MPK5, MPK7 and MPK14. Regulates ABA-induced hydrogen peroxide production and antioxidant defense. Required for tolerance to water stress and oxidative stress. {ECO:0000269|PubMed:25071223}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G883760_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) and hydrogen peroxide. {ECO:0000269|PubMed:25071223}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2454513e-94DQ245451.1 Zea mays clone 15722 mRNA sequence.
GenBankEU9687313e-94EU968731.1 Zea mays clone 323782 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008657279.11e-127zinc finger protein 36
SwissprotQ75KE51e-44ZFP36_ORYSJ; Zinc finger protein 36
TrEMBLA0A1D6K6431e-126A0A1D6K643_MAIZE; Zinc finger protein AZF2
STRINGGRMZM5G883760_P011e-127(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34123273
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43170.17e-28zinc-finger protein 3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Zhang H, et al.
    A novel rice C2H2-type zinc finger protein, ZFP36, is a key player involved in abscisic acid-induced antioxidant defence and oxidative stress tolerance in rice.
    J. Exp. Bot., 2014. 65(20): p. 5795-809
    [PMID:25071223]
  4. Li W, et al.
    A Natural Allele of a Transcription Factor in Rice Confers Broad-Spectrum Blast Resistance.
    Cell, 2017. 170(1): p. 114-126.e15
    [PMID:28666113]