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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM5G880069_P03 | ||||||||
Common Name | LOC100192894, WRKY109 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | WRKY | ||||||||
Protein Properties | Length: 369aa MW: 39393.5 Da PI: 10.3755 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.7 | 7.4e-31 | 299 | 356 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +d ++++tYegeHnh+ GRMZM5G880069_P03 299 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDSAMLIVTYEGEHNHT 356 9*************************988****************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 2.0E-15 | 249 | 295 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 2.4E-33 | 285 | 356 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.987 | 292 | 358 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-26 | 295 | 356 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.6E-37 | 297 | 357 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.6E-26 | 299 | 355 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MEEVEEANRE AVESCRRVLA LLSHPHDPAQ VRSIALGTDE ACTKFRKVVS LLSNGEVGTG 60 EAGPSGTSAS ASHPRAKLVS RRQNPGFLTQ KGFLDSNTPV VVLNSAAHPS PTSAQVHPRA 120 GALDTEGVHP LGVGGPPKLV QPLSAHFQFG NVSSRYQQLP SHHHRHQQQE KLQAAEMFKR 180 SNSGINLKFE SASGTGTMSS ARSFLSSLSM DGSVVASLDG KLPSSSSSFR LIGAPAMSDP 240 ANAAQQAPRR RCTGRGKDGT GKCALAGRCH CSKRSKKLRV KRSIKVPAVS NKIADIPPDE 300 YSWRKYGQKP IKGSPHPRGY YKCSSVRGCP ARKHVERCVD DSAMLIVTYE GEHNHTGMPA 360 QSAAAAAQV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-20 | 290 | 360 | 7 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.31263 | 0.0 | meristem| ovary| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM5G880069 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM5G880069_P03 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT034995 | 0.0 | BT034995.1 Zea mays full-length cDNA clone ZM_BFb0031D13 mRNA, complete cds. | |||
GenBank | BT083614 | 0.0 | BT083614.1 Zea mays full-length cDNA clone ZM_BFb0019G16 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001131554.1 | 0.0 | uncharacterized protein LOC100192894 | ||||
Refseq | XP_008681073.1 | 0.0 | putative WRKY DNA-binding domain superfamily protein isoform X1 | ||||
TrEMBL | B4FD07 | 0.0 | B4FD07_MAIZE; Putative WRKY transcription factor 74 | ||||
STRING | GRMZM5G880069_P03 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28650.1 | 3e-56 | WRKY DNA-binding protein 74 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM5G880069_P03 |
Entrez Gene | 100192894 |