PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G873586_P04
Common NameLOC100501207, ZEAMMB73_122247
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family LBD
Protein Properties Length: 490aa    MW: 54339.8 Da    PI: 4.7637
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G873586_P04genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260131.63.2e-413394381100
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        +Ca+C++lr++C+++Cv+apyfpae+p+kfa+vhk+FG snv kll++lp ++r da+ss+vyeA++r+rdPvyG+vg i+ lqqq++ql+ 
  GRMZM5G873586_P04 339 PCASCRMLRQQCTQECVFAPYFPAEEPHKFAIVHKVFGGSNVFKLLQELPAHQRGDAVSSMVYEANVRTRDPVYGCVGAISVLQQQISQLQM 430
                        7******************************************************************************************* PP

             DUF260  93 elallkee 100
                        + +++++e
  GRMZM5G873586_P04 431 QFSMARAE 438
                        *9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.60.120.2005.3E-61952IPR013320Concanavalin A-like lectin/glucanase domain
SuperFamilySSF561129.71E-7329311IPR011009Protein kinase-like domain
SMARTSM002205.6E-4539315IPR000719Protein kinase domain
PROSITE profilePS5001140.1639310IPR000719Protein kinase domain
PfamPF000691.1E-5440304IPR000719Protein kinase domain
PROSITE patternPS0010704568IPR017441Protein kinase, ATP binding site
Gene3DG3DSA:3.30.200.203.4E-175398No hitNo description
Gene3DG3DSA:1.10.510.107.2E-5099304No hitNo description
PRINTSPR001094.4E-10128141IPR001245Serine-threonine/tyrosine-protein kinase catalytic domain
PRINTSPR001094.4E-10165183IPR001245Serine-threonine/tyrosine-protein kinase catalytic domain
PROSITE patternPS001080171183IPR008271Serine/threonine-protein kinase, active site
PRINTSPR001094.4E-10233255IPR001245Serine-threonine/tyrosine-protein kinase catalytic domain
PRINTSPR001094.4E-10277299IPR001245Serine-threonine/tyrosine-protein kinase catalytic domain
PROSITE profilePS5089125.51338439IPR004883Lateral organ boundaries, LOB
PfamPF031955.0E-41339436IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0004674Molecular Functionprotein serine/threonine kinase activity
GO:0005524Molecular FunctionATP binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MDIIYQDSSC LALEQALHDE GVGPIDLPFM LLRAITKDFS DTQLIGRGGF GEVYKGVLPN  60
GMVVAVKKLL DKIDVLEANF QSEVACLIEV KHRNIVRCLG YSSETQHVRA PYEGRFVWAD  120
LRQRLFCFEY LSKGSLADYL TGASFALQWS VRYQIIKGIC EGVGYLHQHN IIHMDLKPQN  180
ILLDDNMVPK IADFGLSRRL SENQSRIITK TIIGTPGYLA PEFLSSNAIT FKADIYSLGV  240
IITEILTGHK ECTSVDKVLE SWTDMFQTLG SHPLLEQVEV CAEIAINCMN DDPSNRPTIQ  300
DIISSIDETD ARSVTSSSPG GQVITMAGSE SSSSRSRSPC ASCRMLRQQC TQECVFAPYF  360
PAEEPHKFAI VHKVFGGSNV FKLLQELPAH QRGDAVSSMV YEANVRTRDP VYGCVGAISV  420
LQQQISQLQM QFSMARAEIL TLQQQMDVND SLPSQNSFDR YGNGDLKPDS PPEILSSEDE  480
VEEVSSPMSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4oh4_A2e-472731332323Protein BRASSINOSTEROID INSENSITIVE 1
4oh4_B2e-472731332323Protein BRASSINOSTEROID INSENSITIVE 1
5lpb_A1e-47273117296Protein BRASSINOSTEROID INSENSITIVE 1
5lpv_A1e-47273117296Protein BRASSINOSTEROID INSENSITIVE 1
5lpw_A1e-47273117296Protein BRASSINOSTEROID INSENSITIVE 1
5lpy_A1e-47273117296Protein BRASSINOSTEROID INSENSITIVE 1
5lpz_A2e-47273137298Protein BRASSINOSTEROID INSENSITIVE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.987550.0ear
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G873586
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G873586_P04
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9408040.0EU940804.1 Zea mays clone 1065026 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001349518.10.0uncharacterized protein LOC100501207
TrEMBLK7TWK50.0K7TWK5_MAIZE; Disease resistance protein RPM1
STRINGGRMZM5G873586_P040.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.19e-44LBD family protein