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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GRMZM5G862109_P01 |
Common Name | EREB11, ids1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family |
AP2 |
Protein Properties |
Length: 433aa MW: 47604.7 Da PI: 6.8421 |
Description |
AP2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GRMZM5G862109_P01 | genome | MaizeSequence | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 54.5 | 3e-17 | 111 | 160 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g
GRMZM5G862109_P01 111 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 160
78*******************......55************************998 PP
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2 | AP2 | 42.5 | 1.6e-13 | 203 | 253 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV+ +k grW+A+ g +k+++lg f+++ eAa+a+++a+++++g
GRMZM5G862109_P01 203 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEVEAARAYDRAALRFNG 253
89********.7******...5...334336**********99***********9987 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 433 aa
Download sequence Send
to blast |
MVLDLNVASP ADSGTSSSSV LNSADGGFRF GLLGSPVDDD DCSGEMAPGA STGFMTRQLF 60 PSPTPPAEPE PEPVAAPVPV WQPQRAEDLG MAQRPVAPAK KTRRGPRSRS SQYRGVTFYR 120 RTGRWESHIW DCGKQVYLGG FDTAHAAARA YDRAAIKFRG LDADINFSLS DYEDDLKQMR 180 NWTKEEFVHI LRRQSTGFAR GSSKYRGVTL HKCGRWEARM GQLLGKKYIY LGLFDSEVEA 240 ARAYDRAALR FNGREAVTNF EPSSYNAGDN NLRDTETEAI DDGDAIDLDL RISQPNVQDP 300 KRDNTLAGLQ PTCDSPESSN TMASQPMSSS SPWPGYHQNP AVSFHHQRLY SSACHGFFPN 360 HQVQERPVER RPELGAQPFP SWAWQAQGSP HVPLHHSAAS SGFSTAAGAN GGMPLPSHPP 420 AQFPTTTNPF FFP
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Detected in developing branch and spikelet meristems at very early stages of inflorescence formation, and is maintained uniformly in the spikelet meristems until floral organs initiation. Present in some floral organ primordia. {ECO:0000269|PubMed:22003982}. |
Uniprot | TISSUE SPECIFICITY: Highly expressed in developing panicles and in young seedlings (PubMed:20017947, PubMed:22003982). Present at low levels at all developmental stages (PubMed:22003982). {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. |
Function -- GeneRIF ? help
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- The ids1 gene is identified by Mu transposon tagging and the phenotypic consequences are cataloged.
[PMID: 9553044] - Floral meristem initiation and meristem cell fate are regulated by the maize AP2 gene ids1.
[PMID: 18701544]
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Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ727838 | 0.0 | KJ727838.1 Zea mays clone pUT5791 AP2-EREBP transcription factor (EREB11) mRNA, partial cds. |
Publications
? help Back to Top |
- Chuck G,Meeley R,Hake S
Floral meristem initiation and meristem cell fate are regulated by the maize AP2 genes ids1 and sid1. Development, 2008. 135(18): p. 3013-9 [PMID:18701544] - Lee DY,An G
Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice. Plant J., 2012. 69(3): p. 445-61 [PMID:22003982] - Wang L, et al.
Coordinated regulation of vegetative and reproductive branching in rice. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9 [PMID:26631749] - Dai Z,Wang J,Zhu M,Miao X,Shi Z
OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice. Front Plant Sci, 2016. 7: p. 1891 [PMID:28066457] - Chuck G,Meeley RB,Hake S
The control of maize spikelet meristem fate by the APETALA2-like gene indeterminate spikelet1. Genes Dev., 1998. 12(8): p. 1145-54 [PMID:9553044]
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