PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G857944_P02
Common NameCA2P13, LOC100282696, Zm.86073
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NF-YA
Protein Properties Length: 271aa    MW: 29342.8 Da    PI: 11.5199
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G857944_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1032.8e-32102158158
          CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                        +ep+YVN+KQy++Il+RRq Rakle+++kl  ++rkpylheSRh hA++R+RgsgGrF
  GRMZM5G857944_P02 102 NEPIYVNPKQYHGILRRRQLRAKLEAQNKL-VRARKPYLHESRHLHAMKRARGSGGRF 158
                        59****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005219.5E-38100161IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.535101161IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.8E-28103158IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006169.8E-24104126IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006169.8E-24135158IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MLLPSSSSSS ASASKGNSFG KTVNDHLRST LSFDNKQPPF ASQNFDYGQT IACISYPYNR  60
SRSGDVWAAY ESRTSTATVF RSQIAGGGSS TRIPLPLELA ENEPIYVNPK QYHGILRRRQ  120
LRAKLEAQNK LVRARKPYLH ESRHLHAMKR ARGSGGRFLN TKQLQQSHTA LTRSTTTSGT  180
SSSGSTHLRL GGGAAAAGDR SVLAPKTMAS QDSSKKAVSS ALAFTATPML RRDDGFLQHP  240
SHLFSFSGHF GQASAQAGVH NGSQHRVPVM R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-21102169269NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.860730.0endosperm| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G857944
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G857944_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7283580.0KJ728358.1 Zea mays clone pUT6640 CCAAT-HAP2 transcription factor (CA2P13) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001354019.10.0nuclear transcription factor Y subunit A-3
TrEMBLA0A060D8Z50.0A0A060D8Z5_MAIZE; CCAAT-HAP2 transcription factor (Fragment)
STRINGGRMZM5G857944_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132762833
Representative plantOGRP1463244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17590.42e-39nuclear factor Y, subunit A8
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]