PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G857944_P01
Common NameLOC100282696, Zm.86073
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NF-YA
Protein Properties Length: 265aa    MW: 28920.4 Da    PI: 11.1583
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G857944_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1032.7e-3296152158
          CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                        +ep+YVN+KQy++Il+RRq Rakle+++kl  ++rkpylheSRh hA++R+RgsgGrF
  GRMZM5G857944_P01  96 NEPIYVNPKQYHGILRRRQLRAKLEAQNKL-VRARKPYLHESRHLHAMKRARGSGGRF 152
                        59****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005219.5E-3894155IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.53595155IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.7E-2897152IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006169.6E-2498120IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006169.6E-24129152IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MYASLDCSGN SFGKTVNDHL RSTLSFDNKQ PPFASQNFDY GQTIACISYP YNRSRSGDVW  60
AAYESRTSTA TVQFRSQIAG GGSSTRIPLP LELAENEPIY VNPKQYHGIL RRRQLRAKLE  120
AQNKLVRARK PYLHESRHLH AMKRARGSGG RFLNTKQLQQ SHTALTRSTT TSGTSSSGST  180
HLRLGGGAAA AGDRSVLAPK TMASQDSSKK AVSSALAFTA TPMLRRDDGF LQHPSHLFSF  240
SGHFGQASAQ AGVHNGSQHR VPVMR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-2196163269NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.860730.0endosperm| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G857944
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G857944_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7283580.0KJ728358.1 Zea mays clone pUT6640 CCAAT-HAP2 transcription factor (CA2P13) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008643684.10.0nuclear transcription factor Y subunit A-3 isoform X5
TrEMBLA0A1D6HLV31e-169A0A1D6HLV3_MAIZE; Nuclear transcription factor Y subunit A-3
STRINGGRMZM5G857944_P021e-168(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.11e-39nuclear factor Y, subunit A3
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]