PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM5G834596_P03 | ||||||||
Common Name | LOC100274169, LOC101027144 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | DBB | ||||||||
Protein Properties | Length: 352aa MW: 36806 Da PI: 5.3254 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.2 | 5.1e-06 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ +e e++l C ++ lC+ C H H + GRMZM5G834596_P03 4 LCSACEAAEARLLCCADEAALCARCDRDVHAAnrlagkHHR 44 7******99******************99955677778554 PP | |||||||
2 | zf-B_box | 30.9 | 5.7e-10 | 55 | 95 | 3 | 37 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 +++C+ ++e ++ +fC +++ llC+ C ++ H H GRMZM5G834596_P03 55 APNCDICQEAHAYFFCVEDRALLCRACDMAVHTAnafvsaH 95 689****************************9545566666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 4.5E-8 | 1 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.736 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.36E-7 | 3 | 47 | No hit | No description |
PROSITE profile | PS50119 | 9.627 | 53 | 100 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.2E-14 | 53 | 100 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 6.7E-8 | 55 | 87 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 6.09E-10 | 58 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MKVLCSACEA AEARLLCCAD EAALCARCDR DVHAANRLAG KHHRLPLLPP DDVSAPNCDI 60 CQEAHAYFFC VEDRALLCRA CDMAVHTANA FVSAHRRFLL TGVQVGLQPA AAAQDADPHP 120 PAAAEPLQTP PPPDRKAAAA GDGSSPALLY SDDDIDWAAG ADAGGGVSVA VTLPDWSLVH 180 EQFGAPPVVP RHADPALART PSSKRSPRRS VAAAFTVQGG GGLAGGLPDW PLDEFFGFSE 240 YSAGLAFAEN DTSKADSGKL GSTDGSPAGR PSSDASQDFF GQVPEFHQWS VPELPSPPTA 300 SGLHWQGGPR HGAATTTDVA AVFVPDISSP ENPFWCYATA AGQAPTKRRR RC |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.85302 | 0.0 | ovary| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM5G834596 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM5G834596_P03 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT042480 | 0.0 | BT042480.1 Zea mays full-length cDNA clone ZM_BFb0287P19 mRNA, complete cds. | |||
GenBank | BT064277 | 0.0 | BT064277.1 Zea mays full-length cDNA clone ZM_BFc0155A07 mRNA, complete cds. | |||
GenBank | BT066855 | 0.0 | BT066855.1 Zea mays full-length cDNA clone ZM_BFb0081H14 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001266566.2 | 0.0 | ORPHAN transcription factor | ||||
TrEMBL | B4FZE2 | 0.0 | B4FZE2_MAIZE; ORPHAN transcription factor | ||||
STRING | GRMZM5G834596_P03 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78600.1 | 6e-30 | light-regulated zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM5G834596_P03 |
Entrez Gene | 100274169 | 101027144 |
Publications ? help Back to Top | |||
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