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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GRMZM5G834596_P01 |
Common Name | LOC100274169, LOC101027144 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family |
DBB |
Protein Properties |
Length: 352aa MW: 36806 Da PI: 5.3254 |
Description |
DBB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GRMZM5G834596_P01 | genome | MaizeSequence | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 18.2 | 5.1e-06 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
C+ +e e++l C ++ lC+ C H H +
GRMZM5G834596_P01 4 LCSACEAAEARLLCCADEAALCARCDRDVHAAnrlagkHHR 44
7******99******************99955677778554 PP
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2 | zf-B_box | 30.9 | 5.7e-10 | 55 | 95 | 3 | 37 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
+++C+ ++e ++ +fC +++ llC+ C ++ H H
GRMZM5G834596_P01 55 APNCDICQEAHAYFFCVEDRALLCRACDMAVHTAnafvsaH 95
689****************************9545566666 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 352 aa
Download sequence Send
to blast |
MKVLCSACEA AEARLLCCAD EAALCARCDR DVHAANRLAG KHHRLPLLPP DDVSAPNCDI 60 CQEAHAYFFC VEDRALLCRA CDMAVHTANA FVSAHRRFLL TGVQVGLQPA AAAQDADPHP 120 PAAAEPLQTP PPPDRKAAAA GDGSSPALLY SDDDIDWAAG ADAGGGVSVA VTLPDWSLVH 180 EQFGAPPVVP RHADPALART PSSKRSPRRS VAAAFTVQGG GGLAGGLPDW PLDEFFGFSE 240 YSAGLAFAEN DTSKADSGKL GSTDGSPAGR PSSDASQDFF GQVPEFHQWS VPELPSPPTA 300 SGLHWQGGPR HGAATTTDVA AVFVPDISSP ENPFWCYATA AGQAPTKRRR RC
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT042480 | 0.0 | BT042480.1 Zea mays full-length cDNA clone ZM_BFb0287P19 mRNA, complete cds. |
GenBank | BT064277 | 0.0 | BT064277.1 Zea mays full-length cDNA clone ZM_BFc0155A07 mRNA, complete cds. |
GenBank | BT066855 | 0.0 | BT066855.1 Zea mays full-length cDNA clone ZM_BFb0081H14 mRNA, complete cds. |