PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G830949_P01
Common NameZEAMMB73_048126, Zm.35624
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 362aa    MW: 39419.1 Da    PI: 11.0389
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G830949_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.62.7e-15288312226
                        -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                        ktelC+ + +tG C+yGd+C+FaHg
  GRMZM5G830949_P01 288 KTELCNKWEETGACPYGDQCQFAHG 312
                        9***********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.09E-10283318IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-18283319IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-9286313IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.225286314IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-12288312IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-11320350IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-8321350IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4324351IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.338324352IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MQEALVSPAN AGRLRFRSGL GAQAVRLRGP APRLAALPQP QPQPRRRPMT RCSAARRRRS  60
APASASPPRR RRSPRPPSRS RRPPPPPSPT TAATAPGTDA DADAATGHTL RLARLALQYQ  120
EVADRYELCL ARLADAADDA AALRRENAEL RNANADLTRR LALLSGIGKQ VAAAAAAAEE  180
ARRLRFGEPK AVPAAKDCAT EKPAVLPPKS ISVRSIDFLL KMNQPKQVQP PATTPAASNR  240
KHRASNPTKP SSRVYKGNGG EKKDEELPKE QHAAGGVELE VFNQGMLKTE LCNKWEETGA  300
CPYGDQCQFA HGVAELRPVI RHPRYKTQVC RMVLAGEVCP YGHRCHFRHT LTPAERLHLA  360
CP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-20288349566Butyrate response factor 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15671RRRSAPASASPPRRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.356240.0root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G830949
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G830949_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0348000.0BT034800.1 Zea mays full-length cDNA clone ZM_BFb0019C18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001131407.11e-166uncharacterized protein LOC100192736
RefseqXP_020397461.11e-165uncharacterized protein LOC100192736 isoform X1
RefseqXP_020397462.11e-166uncharacterized protein LOC100192736 isoform X2
SwissprotA2ZVY53e-93C3H9_ORYSJ; Zinc finger CCCH domain-containing protein 9
TrEMBLA0A3L6DRQ21e-164A0A3L6DRQ2_MAIZE; Zinc finger CCCH domain-containing protein 9
TrEMBLB4FCG21e-164B4FCG2_MAIZE; Zinc finger CCCH domain-containing protein 14
STRINGGRMZM5G830949_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27753784
Representative plantOGRP20581636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.17e-47C3H family protein