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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GRMZM5G830671_P01 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family |
HD-ZIP |
Protein Properties |
Length: 242aa MW: 26213.3 Da PI: 9.6311 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GRMZM5G830671_P01 | genome | MaizeSequence | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 53.5 | 4e-17 | 103 | 157 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ ++t+eq + Le+ F+ ++ +s++++ e A++++L+ rqV vWFqNrRa+ k
GRMZM5G830671_P01 103 RKKLRLTTEQSKLLEDTFRAHNILSHAQKHEVARQVDLSARQVEVWFQNRRARTK 157
788899***********************************************98 PP
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2 | HD-ZIP_I/II | 102 | 5e-33 | 103 | 190 | 1 | 88 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88
+kk+rl++eq+klLE++F++++ L++ +K+e+ar+++l++rqv+vWFqnrRARtk+kq+E+d+e+L+r+ ++l++en rL+ e e+L+
GRMZM5G830671_P01 103 RKKLRLTTEQSKLLEDTFRAHNILSHAQKHEVARQVDLSARQVEVWFQNRRARTKLKQTEVDCETLRRWRESLADENLRLRLELEQLQ 190
69***********************************************************************************998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top |
PO Term |
PO Category |
PO Description |
PO:0006339 | anatomy | juvenile vascular leaf |
PO:0006340 | anatomy | adult vascular leaf |
PO:0008018 | anatomy | transition vascular leaf |
PO:0009025 | anatomy | vascular leaf |
PO:0020040 | anatomy | leaf base |
PO:0025142 | anatomy | leaf tip |
PO:0001052 | developmental stage | vascular leaf expansion stage |
PO:0001053 | developmental stage | vascular leaf post-expansion stage |
PO:0007001 | developmental stage | early whole plant fruit ripening stage |
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage |
PO:0007063 | developmental stage | LP.07 seven leaves visible stage |
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage |
PO:0007101 | developmental stage | LP.09 nine leaves visible stage |
PO:0007106 | developmental stage | LP.03 three leaves visible stage |
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage |
Sequence ? help Back to Top |
Protein Sequence Length: 242 aa
Download sequence Send
to blast |
MYTTTRAMEK EEGFGKSWLG LGIGGGGRDL NLMKRSRPLR PVRLDLLFPP SVEGGEAAAR 60 SRKAGAGALR NMSLKQVAGD DDGGQSSHGG PSPSDDDDGA GARKKLRLTT EQSKLLEDTF 120 RAHNILSHAQ KHEVARQVDL SARQVEVWFQ NRRARTKLKQ TEVDCETLRR WRESLADENL 180 RLRLELEQLQ RWATAAAGQS SASPSPATAT ASVCPSCDKV VVVTVTSCGE TSGKSSTSSY 240 SS
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 151 | 159 | RRARTKLKQ |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in roots, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU955431 | 4e-54 | EU955431.1 Zea mays clone 1531862 hypothetical protein mRNA, complete cds. |