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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GRMZM5G822829_P03 |
Common Name | S, ZEAMMB73_424664 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family |
bHLH |
Protein Properties |
Length: 610aa MW: 66398.6 Da PI: 4.778 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GRMZM5G822829_P03 | genome | MaizeSequence | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 41.3 | 2.7e-13 | 415 | 462 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
++h + Er+RR+++N+ f L++llP+ +++Ka+iL +++ Y+k+Lq
GRMZM5G822829_P03 415 KNHVMSERKRREKLNEMFLVLKSLLPSiH------RVNKASILAETIAYLKELQ 462
6899***********************66......9*****************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 610 aa
Download sequence Send
to blast |
MALSASRVQQ AEELLQRPAE RQLMRSQLAA AARSINWSYA LFWSISDTQP GVLTWTDGFY 60 NGEVKTRKIS NSVELTSDHL VMQRSDQLRE LYEALLSGEG DRRAAPARPA GSLSPEDLGD 120 TEWYYVVSMT YAFRPGQGLP GRSFASDEHV WLCNAHLAGS KAFPRALLAK SILCIPVMGG 180 VLELGTTDTV PEAPDLVSRA TAAFWEPQCP TYSEEPSSSP SGRANETGEA AADDGTFAFE 240 ELDHNNGMDI EAMTAAGGHG QEEELRLREA EALSDDASLE HITKEIEEFY SLCDEMDLQA 300 LPLPLEDGWT VDASNFEVPC SSPQPAPPPV DRATANVAAD ASRAPVYGSR ATSFMAWTRS 360 SQQSSCSDDA APAAVVPAIE EPQRLLKKVV AGGGAWESCG GATGAAQEMS GTGTKNHVMS 420 ERKRREKLNE MFLVLKSLLP SIHRVNKASI LAETIAYLKE LQRRVQELES SREPASRPSE 480 TTTRLITRPS RGNNESVRKE VCAGSKRKSP ELGRDDVERP PVLIMDAGTS NVTVTVSDKD 540 VLLEVQCRWE ELLMTRVFDA IKSLHLDVLS VQASAPDGFM GLKIRAQFAG SGAVVPWMIS 600 EALRKAIGKR
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4rqw_A | 8e-19 | 36 | 204 | 23 | 192 | Transcription factor MYC3 |
4rqw_B | 8e-19 | 36 | 204 | 23 | 192 | Transcription factor MYC3 |
4rru_A | 2e-18 | 36 | 200 | 62 | 227 | Transcription factor MYC3 |
4rs9_A | 8e-19 | 36 | 204 | 23 | 192 | Transcription factor MYC3 |
4ywc_A | 2e-18 | 36 | 200 | 62 | 227 | Transcription factor MYC3 |
4ywc_B | 2e-18 | 36 | 200 | 62 | 227 | Transcription factor MYC3 |
4yz6_A | 8e-19 | 36 | 204 | 23 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 420 | 425 | ERKRRE |
2 | 421 | 426 | RKRREK |
Functional Description ? help
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Source |
Description |
UniProt | Putative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | X60706 | 0.0 | X60706.1 Maize SN mRNA, involved in tissue-specific anthocyanin expression. |