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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GRMZM5G822829_P01 |
Common Name | S, Z138B04_Z333J11.11, ZEAMMB73_424664 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family |
bHLH |
Protein Properties |
Length: 585aa MW: 63507.4 Da PI: 4.7736 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GRMZM5G822829_P01 | genome | MaizeSequence | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 41.4 | 2.6e-13 | 390 | 437 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
++h + Er+RR+++N+ f L++llP+ +++Ka+iL +++ Y+k+Lq
GRMZM5G822829_P01 390 KNHVMSERKRREKLNEMFLVLKSLLPSiH------RVNKASILAETIAYLKELQ 437
6899***********************66......9*****************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 585 aa
Download sequence Send
to blast |
MESLGGSQIS GEVGLLQQRL EKKLSRVLTW TDGFYNGEVK TRKISNSVEL TSDHLVMQRS 60 DQLRELYEAL LSGEGDRRAA PARPAGSLSP EDLGDTEWYY VVSMTYAFRP GQGLPGRSFA 120 SDEHVWLCNA HLAGSKAFPR ALLAKSILCI PVMGGVLELG TTDTVPEAPD LVSRATAAFW 180 EPQCPTYSEE PSSSPSGRAN ETGEAAADDG TFAFEELDHN NGMDIEAMTA AGGHGQEEEL 240 RLREAEALSD DASLEHITKE IEEFYSLCDE MDLQALPLPL EDGWTVDASN FEVPCSSPQP 300 APPPVDRATA NVAADASRAP VYGSRATSFM AWTRSSQQSS CSDDAAPAAV VPAIEEPQRL 360 LKKVVAGGGA WESCGGATGA AQEMSGTGTK NHVMSERKRR EKLNEMFLVL KSLLPSIHRV 420 NKASILAETI AYLKELQRRV QELESSREPA SRPSETTTRL ITRPSRGNNE SVRKEVCAGS 480 KRKSPELGRD DVERPPVLIM DAGTSNVTVT VSDKDVLLEV QCRWEELLMT RVFDAIKSLH 540 LDVLSVQASA PDGFMGLKIR AQFAGSGAVV PWMISEALRK AIGKR
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4rqw_A | 6e-14 | 27 | 179 | 46 | 192 | Transcription factor MYC3 |
4rqw_B | 6e-14 | 27 | 179 | 46 | 192 | Transcription factor MYC3 |
4rs9_A | 6e-14 | 27 | 179 | 46 | 192 | Transcription factor MYC3 |
4yz6_A | 6e-14 | 27 | 179 | 46 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 395 | 400 | ERKRRE |
2 | 396 | 401 | RKRREK |
Functional Description ? help
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Source |
Description |
UniProt | Putative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | X60706 | 0.0 | X60706.1 Maize SN mRNA, involved in tissue-specific anthocyanin expression. |
Publications
? help Back to Top |
- Swigonov
Close split of sorghum and maize genome progenitors. Genome Res., 2004. 14(10A): p. 1916-23 [PMID:15466289] - Lai J, et al.
Gene loss and movement in the maize genome. Genome Res., 2004. 14(10A): p. 1924-31 [PMID:15466290] - Swigonov
Structure and evolution of the r/b chromosomal regions in rice, maize and sorghum. Genetics, 2005. 169(2): p. 891-906 [PMID:15489523] - Pattanaik S,Xie CH,Yuan L
The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength. Planta, 2008. 227(3): p. 707-15 [PMID:18075757] - Huang ZA, et al.
The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.). J Genet Genomics, 2012. 39(3): p. 149-56 [PMID:22464474] - Perrot GH,Cone KC
Nucleotide sequence of the maize R-S gene. Nucleic Acids Res., 1989. 17(19): p. 8003 [PMID:2798145] - Li P, et al.
Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize. PLoS ONE, 2018. 13(1): p. e0190670 [PMID:29304111]
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