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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM5G812272_P01 | ||||||||
Common Name | LOC100279449, ZEAMMB73_267137 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | WRKY | ||||||||
Protein Properties | Length: 201aa MW: 21195.2 Da PI: 8.3211 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 58.4 | 1.5e-18 | 5 | 43 | 21 | 59 |
-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 21 prsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 rsYYrCt+++Cpvkk+vers++dp vv++tYeg+H+h+ GRMZM5G812272_P01 5 CRSYYRCTTQRCPVKKRVERSHQDPAVVITTYEGKHTHP 43 6*************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.8E-17 | 5 | 45 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.15E-15 | 5 | 45 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.2E-13 | 5 | 43 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-9 | 6 | 44 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 18.946 | 6 | 45 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MVMACRSYYR CTTQRCPVKK RVERSHQDPA VVITTYEGKH THPIPSTLRG SSTHLLAAQL 60 HHHHHHNIVG AFPPPPPPPQ TMCLPFVGRT GDGGGVIDML GLCLPPRNHA AVPPAATGLA 120 PSPCCMSGPV GTVAGATTTT APTTTTVTTT TTSSPPPPPS LQTMQHFMAQ DDFGLLQDML 180 PSSSSSLSFV VHSNGSNVQL P |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM5G812272 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM5G812272_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT054254 | 0.0 | BT054254.1 Zea mays full-length cDNA clone ZM_BFb0200C23 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001341332.1 | 1e-140 | uncharacterized protein LOC100279449 | ||||
TrEMBL | A0A3L6DM97 | 1e-139 | A0A3L6DM97_MAIZE; Putative WRKY transcription factor 28 | ||||
TrEMBL | B7ZY62 | 1e-141 | B7ZY62_MAIZE; Uncharacterized protein | ||||
TrEMBL | K7V474 | 1e-139 | K7V474_MAIZE; Putative WRKY transcription factor 71 | ||||
STRING | GRMZM5G812272_P02 | 1e-139 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29860.1 | 4e-23 | WRKY DNA-binding protein 71 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM5G812272_P01 |