PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G704330_P01 | ||||||||
Common Name | LOC103633687 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | LBD | ||||||||
Protein Properties | Length: 614aa MW: 66507.1 Da PI: 5.6913 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 78.7 | 9.8e-25 | 12 | 109 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C++Ck lrr+C+ +C++ap f ae+ fa+v++++G nv ++++ + p e+r+ a+++lv eA+ar rdPv G+v+ i+ lq+ +++ GRMZM2G704330_P01 12 QCEVCKKLRRSCPLNCIFAPNFSAEE---FAAVNRVYGSGNVANMIRCVtPSEQRRVAAATLVAEARARERDPVFGCVSYIRILQEFNYNAR 100 6********************99876...*******************955666*********************************99999 PP DUF260 92 aelallkee 100 +++++++ee GRMZM2G704330_P01 101 KQVDEAREE 109 999998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.286 | 11 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-23 | 12 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 614 aa Download sequence Send to blast |
MEKNQGTGRR AQCEVCKKLR RSCPLNCIFA PNFSAEEFAA VNRVYGSGNV ANMIRCVTPS 60 EQRRVAAATL VAEARARERD PVFGCVSYIR ILQEFNYNAR KQVDEAREEI AREFGAAAAA 120 EPVDLAAAGP AVRLEARAQV DAALKDAREL DARMLDVRKG NDVILWRELQ QQQAAVKGKG 180 KGKRAMKGKE VDVKRRRHEP SLSEQTMQVV PQAAKPRNPG PPGFPDDHSR QQVAVAVAEA 240 ERTAPPDAPE GHGHGRQLHH QMSEPEAQQQ ASAADASAGQ HTGTGHPHHA GDAAAPDIPA 300 GPGHDSSTSV IRAMQEVQHA GATGEQDQHH VAQHAQNEHC VALGHGDPYG ISQDILQLQL 360 LLMGQCGAAP ATEQDVTAMM QQMAAAASGW QQQDHPAPQP QYAEMRDNTL GHGHGHPDGL 420 SSEEILQPQE LSMEQCDAAV EGTAPAEQDV MAMMQQMAAA ASGWQQQDHL APQPQYVEMR 480 DNTLGHGHGH PDGLSSEKIL QLQELLMGQC DAAEEGAAPT EQEVMVMMQQ MAAAAWPQQD 540 PAPQYAETDI TIGHGHPDMQ KLLDTTELAR NQLMTNNYVT TMVQQNSSSV LAPSSPRGRT 600 SPRPGLLPPR DWPW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-19 | 8 | 126 | 7 | 131 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-19 | 8 | 126 | 7 | 131 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G704330 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G704330_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1D6HSN9 | 0.0 | A0A1D6HSN9_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM2G704330_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16457 | 9 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42430.1 | 9e-14 | lateral organ boundaries-domain 16 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G704330_P01 |
Entrez Gene | 103633687 |