|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
GRMZM2G702026_P01 |
Common Name | Zm.4043 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
Family |
ARF |
Protein Properties |
Length: 677aa MW: 75129.4 Da PI: 6.303 |
Description |
ARF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GRMZM2G702026_P01 | genome | MaizeSequence | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 73.4 | 2.7e-23 | 122 | 222 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85
f+k+lt sd++++g +++ +++aee+ ++++ + +l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F
GRMZM2G702026_P01 122 FCKTLTASDTSTHGGFSVLRRHAEEClpqldmtQNPPWQ--ELVAKDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFL-- 209
99**************************99975555545..8************************************************.. PP
SSSEE..EEEEE- CS
B3 86 grsefelvvkvfr 98
+ +++el+v+v+r
GRMZM2G702026_P01 210 RGENGELRVGVRR 222
449999*****97 PP
|
2 | Auxin_resp | 105.9 | 4.6e-35 | 248 | 333 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdl...dpvrWpnSkWrsLk 83
a+ha+st++ F+v+Y+Pr+s+seFvv+v+k+++a ++k+svGmRfkm+fe+++s+err+sGt++g+ ++ +++ W nS+WrsLk
GRMZM2G702026_P01 248 ASHAISTGTLFSVFYKPRTSRSEFVVSVNKYLEAKNHKMSVGMRFKMRFEGDESPERRFSGTIIGMGCMpanSTSPWANSEWRSLK 333
789**************************************************************99874335679********96 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 677 aa
Download sequence Send
to blast |
MAEAGVARGS GSAGDALFRE LWHACAGPLV TVPRQGELVY YFPQGHMEQL EASTDQQLDQ 60 HLPLFNLPHK ILCKVVNVEL RAETDSDEVY AQIMLQPQTE QSEPTSPDPE PPEPERCNIH 120 SFCKTLTASD TSTHGGFSVL RRHAEECLPQ LDMTQNPPWQ ELVAKDLHGN EWHFRHIFRG 180 QPRRHLLTTG WSVFVSSKRL VAGDAFIFLR GENGELRVGV RRLMRQLNNM PSSVISSHSM 240 HLGVLATASH AISTGTLFSV FYKPRTSRSE FVVSVNKYLE AKNHKMSVGM RFKMRFEGDE 300 SPERRFSGTI IGMGCMPANS TSPWANSEWR SLKVQWDEPS AILRPDRVSP WEVEPLDRTN 360 PQPPQPPLRN KRARPPASPS IAPELAPVFG FWKSPAEPAQ AFSFSGLQRT QELYHSSPSS 420 MFSSSLNVGF NPKYEGPTPN TNHLYWTMRE TRTESYSASI NKAPTEKKQE STTSGCRLFG 480 IEIGSSAVSP VVTVASVGHD PPPPALSVDA ESDQLSQPSH ANKATDAPAA SSDRSPNETE 540 SRQARSCTKV IMQGVAVGRA VDLTRLDGYD DLRRKLEEMF DIPGELSASL KKWKVIYTDD 600 EDDMMLVGDD PWSEFCRMVK RIYIYSYEEA KSLTPKAKLP AIGGDTGVKP DPSKLPPESD 660 VPQSDSDNSA PVAADKD
|
Expression -- UniGene
? help Back to Top |
UniGene ID |
E-value |
Expressed in |
Zm.4043 | 0.0 | ear| embryo| endosperm| leaf| meristem| ovary| pericarp| shoot |
Expression --
Description ? help
Back to Top |
Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | BT065284 | 0.0 | BT065284.1 Zea mays full-length cDNA clone ZM_BFb0080F20 mRNA, complete cds. |