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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G701689_P01 | ||||||||
Common Name | pco123576 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | CPP | ||||||||
Protein Properties | Length: 772aa MW: 83066.5 Da PI: 7.3551 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 48.8 | 1.4e-15 | 460 | 500 | 2 | 42 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 ++k+C+CkkskClk+YCeCfaag++Cse C+C +C+N++++ GRMZM2G701689_P01 460 SCKRCSCKKSKCLKLYCECFAAGVYCSEPCSCIGCMNNQSH 500 689**********************************9975 PP | |||||||
2 | TCR | 51.3 | 2.4e-16 | 545 | 584 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnCkks+ClkkYCeCf+ g+ Cs +C+Ce+CkN GRMZM2G701689_P01 545 RHKRGCNCKKSSCLKKYCECFQGGVGCSISCRCEGCKNAF 584 589***********************************75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 2.9E-17 | 459 | 500 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 36.044 | 460 | 585 | IPR005172 | CRC domain |
Pfam | PF03638 | 1.2E-11 | 462 | 497 | IPR005172 | CRC domain |
SMART | SM01114 | 6.0E-17 | 545 | 586 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 4.7E-12 | 547 | 583 | IPR005172 | CRC domain |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009074 | anatomy | style | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 772 aa Download sequence Send to blast |
MDTPDRPRAG AGAGFEDSPV FNFINNLSPI PPPKPLDSAH NVQLFKSSDL APVSSIFASP 60 HVNPTKGTKV LIRDESVQLP HELHSPSSVR TRIGTSGSFR MIRCKDIVPE NCNITCQLNE 120 ASIDSSDHTS SSTGQLTQSI KDAAGSMESD KDQCAGGKID LTMSQECTGL EGMNLDESSP 180 DRMDSSHSGI VVHENQLSEQ NNDEPAAYNG VYMITHQSSS DMLTLAVPSG TEAQPMNDTQ 240 KADNPYPCES LLDVQSSGNC TQNSVHEPHL YWNGAVEGAA VAYTPQALPG ALQSQLMPCN 300 KLNEPKDYMP TEQNALSQHL RGMRRRSLFN EKAGLSNKGV DKASDHHPVN STTPKCKTIS 360 GDNSKTLRTP PCALPGIGLH LNALAATATP KEKIVPQDIQ STINESSNLI GPAGSSPAPS 420 EQNIINDDFT QTTDVATAEA SSQGSPKKKR HKFDSGDGTS CKRCSCKKSK CLKLYCECFA 480 AGVYCSEPCS CIGCMNNQSH TETVLSTRQQ IESRNPLAFA PKVIHTSEPG LELRDFSNKT 540 PASARHKRGC NCKKSSCLKK YCECFQGGVG CSISCRCEGC KNAFGKREGA AVLSIEEPKQ 600 GLEEKDVCVK EEKSEIEKQL VVYQTPDDAP AENVLTTPSM VQCRPLACRP PPSSKKSSKK 660 PRSSTKLTGH PSRLCNLQAP PKTDTMLSPF ENYAEMVLGD STSDILKGNS SPQTSVKVVS 720 PNKKRISPLR MGTGLSPICR SGRKLILKSI PSFPSLGGDV NNEDPETKLP AP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 2e-15 | 464 | 582 | 14 | 120 | Protein lin-54 homolog |
5fd3_B | 2e-15 | 464 | 582 | 14 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.84999 | 0.0 | aerial organ| cell culture| ear| embryo| endosperm| meristem| pericarp| pollen| sheath| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G701689 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G701689_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU972205 | 0.0 | EU972205.1 Zea mays clone 377413 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001304301.1 | 0.0 | uncharacterized protein LOC100216775 | ||||
TrEMBL | A0A1D6MW77 | 0.0 | A0A1D6MW77_MAIZE; Protein tesmin/TSO1-like CXC 2 | ||||
STRING | GRMZM2G701689_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12746 | 26 | 30 | Representative plant | OGRP993 | 17 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22780.1 | 8e-74 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G701689_P01 |
Entrez Gene | 100216775 |