PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G549512_P01
Common NameLOC100285086, WRKY122, ZEAMMB73_197612
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 566aa    MW: 61709.9 Da    PI: 6.6175
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G549512_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.71.4e-29250306259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         Dg+nWrKYGqK+vk+s+++rsYYrCt +gC +kkkve+   d++vvei+Y+g Hnhe
  GRMZM2G549512_P01 250 ADGFNWRKYGQKQVKSSDNSRSYYRCTNSGCLAKKKVEHFP-DGRVVEIIYRGAHNHE 306
                        7****************************************.***************8 PP
2WRKY100.59.9e-32417474259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        +Dgy+WrKYGqK vkg+++prsYYrCt+ gCpv+k+ve++ +d + +++tYeg+Hnh+
  GRMZM2G549512_P01 417 SDGYRWRKYGQKIVKGNPNPRSYYRCTHGGCPVRKHVEKAPDDVNNIVVTYEGKHNHD 474
                        8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-25241308IPR003657WRKY domain
PROSITE profilePS5081121.999244308IPR003657WRKY domain
SuperFamilySSF1182904.71E-23246308IPR003657WRKY domain
SMARTSM007741.8E-31249307IPR003657WRKY domain
PfamPF031061.9E-22251306IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.4E-31408476IPR003657WRKY domain
PROSITE profilePS5081132.948411476IPR003657WRKY domain
SuperFamilySSF1182902.35E-27411476IPR003657WRKY domain
SMARTSM007741.2E-35416475IPR003657WRKY domain
PfamPF031061.5E-25418474IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MADGDPEPAP APAPALANEK LHVRAAAYVD ETRPPPPLEP SGGPDEEKRP PEEVEAEVEM  60
HPPREPTGEP PVDRPGVEVV ADMKANEVEK ERGDRAKEKR EKDKGKGKEE KEKVDEEAKG  120
KVTAVMKVDG TEKEVKPTRR PAGASAETPI LAVPVVAVPC FIAPPGFAGQ FAMTHQAALA  180
SVTAQAQMHL QSPTPSACSE VPSSPFYMTP RSLVPLQHSP SVTEGNICTP IADKSFSSDS  240
KSHHVVNMVA DGFNWRKYGQ KQVKSSDNSR SYYRCTNSGC LAKKKVEHFP DGRVVEIIYR  300
GAHNHEPPQK TRFAKERVTP ISVPSGGETL RLVNTEIVES STPTCELERS AISETSEQHL  360
FCSSDCEGDA GNKSEDEHPS AEALPKRRTL EATAPNLTPV RRTVREQKII VQAGKMSDGY  420
RWRKYGQKIV KGNPNPRSYY RCTHGGCPVR KHVEKAPDDV NNIVVTYEGK HNHDEPFRSS  480
SIPVSVISPS ATATEQPNTS STSDERPPTI TQKDANSESD KETTLKFGGE KALESAQTLL  540
SIKTNSDDMK NSVLKETSAA VPVQNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-252464761477Probable WRKY transcription factor 4
2lex_A3e-252464761477Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.245780.0cell culture| glume| meristem| pericarp| root| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G549512
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G549512_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0430070.0BT043007.1 Zea mays full-length cDNA clone ZM_BFc0076I12 mRNA, complete cds.
GenBankBT0552540.0BT055254.1 Zea mays full-length cDNA clone ZM_BFc0054H16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151453.10.0WRKY transcription factor 4
TrEMBLA0A3L6EXG60.0A0A3L6EXG6_MAIZE; Putative WRKY transcription factor 4
TrEMBLB4G0W90.0B4G0W9_MAIZE; Putative WRKY transcription factor 32
STRINGGRMZM2G549512_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58203455
Representative plantOGRP1449844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-67WRKY DNA-binding protein 4