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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GRMZM2G531231_P01 |
Common Name | ZEAMMB73_830022 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family |
M-type_MADS |
Protein Properties |
Length: 249aa MW: 27198.9 Da PI: 10.2617 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GRMZM2G531231_P01 | genome | MaizeSequence | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 81.3 | 6.4e-26 | 39 | 80 | 1 | 42 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
krien +nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fss
GRMZM2G531231_P01 39 KRIENMTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSS 80
79**************************************97 PP
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2 | SRF-TF | 91.4 | 4.6e-29 | 178 | 227 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
krien++nrqvtfskRrng lKKA+ELSvLCdaeva+++fss+g lyey+
GRMZM2G531231_P01 178 KRIENTTNRQVTFSKRRNGPLKKAYELSVLCDAEVALVVFSSRGCLYEYA 227
79***********************************************8 PP
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Protein Features
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 1.5E-30 | 31 | 90 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 26.927 | 31 | 80 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.68E-30 | 32 | 80 | No hit | No description |
SuperFamily | SSF55455 | 7.72E-24 | 32 | 90 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.9E-23 | 40 | 80 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.651 | 170 | 230 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.3E-37 | 170 | 229 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.33E-27 | 171 | 230 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.58E-36 | 171 | 229 | No hit | No description |
PRINTS | PR00404 | 6.5E-31 | 172 | 192 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.3E-24 | 179 | 226 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.5E-31 | 192 | 207 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.5E-31 | 207 | 228 | IPR002100 | Transcription factor, MADS-box |
Sequence ? help Back to Top |
Protein Sequence Length: 249 aa
Download sequence Send
to blast |
MTIVTTDLSC GPSSKAKGGQ PAVTVSGGDR QGSSKIEIKR IENMTNRQVT FCKRRNGLLK 60 KAYELSVLCD AEVALVVFSS VAASTSTPTT GLYTRTSAVI SLGDSSSLAG LLLAQTWSSR 120 DWFGETKRER EREPRALEKN TFTKTDLSCG PSSKAKGGQP AVTVSGGDRQ GRGKIEIKRI 180 ENTTNRQVTF SKRRNGPLKK AYELSVLCDA EVALVVFSSR GCLYEYANNM PLRVRQQQVM 240 RNKFAAEDE
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
3kov_A | 5e-18 | 32 | 227 | 1 | 57 | Myocyte-specific enhancer factor 2A |
3kov_B | 5e-18 | 32 | 227 | 1 | 57 | Myocyte-specific enhancer factor 2A |
3kov_I | 5e-18 | 32 | 227 | 1 | 57 | Myocyte-specific enhancer factor 2A |
3kov_J | 5e-18 | 32 | 227 | 1 | 57 | Myocyte-specific enhancer factor 2A |
3p57_A | 5e-18 | 32 | 227 | 1 | 57 | Myocyte-specific enhancer factor 2A |
3p57_B | 5e-18 | 32 | 227 | 1 | 57 | Myocyte-specific enhancer factor 2A |
3p57_C | 5e-18 | 32 | 227 | 1 | 57 | Myocyte-specific enhancer factor 2A |
3p57_D | 5e-18 | 32 | 227 | 1 | 57 | Myocyte-specific enhancer factor 2A |
3p57_I | 5e-18 | 32 | 227 | 1 | 57 | Myocyte-specific enhancer factor 2A |
3p57_J | 5e-18 | 32 | 227 | 1 | 57 | Myocyte-specific enhancer factor 2A |
5f28_C | 7e-18 | 32 | 227 | 2 | 58 | MEF2C |
5f28_D | 7e-18 | 32 | 227 | 2 | 58 | MEF2C |
6byy_A | 6e-18 | 32 | 227 | 2 | 58 | MEF2 CHIMERA |
6byy_B | 6e-18 | 32 | 227 | 2 | 58 | MEF2 CHIMERA |
6byy_C | 6e-18 | 32 | 227 | 2 | 58 | MEF2 CHIMERA |
6byy_D | 6e-18 | 32 | 227 | 2 | 58 | MEF2 CHIMERA |
6bz1_A | 7e-18 | 32 | 227 | 2 | 58 | MEF2 CHIMERA |
6bz1_B | 7e-18 | 32 | 227 | 2 | 58 | MEF2 CHIMERA |
6bz1_C | 7e-18 | 32 | 227 | 2 | 58 | MEF2 CHIMERA |
6bz1_D | 7e-18 | 32 | 227 | 2 | 58 | MEF2 CHIMERA |
Search in ModeBase |
Orthologous Group
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP16 | 17 | 761 |