PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G496770_P01
Common NameLOC100273393, MYB166, ZEAMMB73_715781
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 278aa    MW: 29558.7 Da    PI: 6.2309
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G496770_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.52e-151562148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g W++eEd++l d++ ++G g+W++ +++ g+ R +k+c++rw +yl
  GRMZM2G496770_P01 15 KGLWSPEEDQKLRDYILLHGHGCWSALPAKAGLQRNGKSCRLRWINYL 62
                       678*******************************************97 PP
2Myb_DNA-binding56.85.2e-1869113248
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        g +++eE+e    +++ lG++ W++Ia++++ gRt++++k++w++yl
  GRMZM2G496770_P01  69 GTFSPEEEETVMSLHATLGNK-WSRIAKHLP-GRTDNEVKNHWNSYL 113
                        78*******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-211065IPR009057Homeodomain-like
PROSITE profilePS5129416.0691062IPR017930Myb domain
SuperFamilySSF466898.07E-2912109IPR009057Homeodomain-like
SMARTSM007174.2E-111464IPR001005SANT/Myb domain
PfamPF002491.5E-131562IPR001005SANT/Myb domain
CDDcd001672.20E-101862No hitNo description
PROSITE profilePS5129427.01763117IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-2666116IPR009057Homeodomain-like
SMARTSM007176.1E-1667115IPR001005SANT/Myb domain
PfamPF002497.4E-1769113IPR001005SANT/Myb domain
CDDcd001671.33E-1270113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009066anatomyanther
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGCKACDKPK PSYRKGLWSP EEDQKLRDYI LLHGHGCWSA LPAKAGLQRN GKSCRLRWIN  60
YLRPGLKHGT FSPEEEETVM SLHATLGNKW SRIAKHLPGR TDNEVKNHWN SYLKKRVEGP  120
STPPSNSDDS HCAKPGRGGS TARETGDDRP ADYSGSSELR EPSSSSSPDT SCLTGPPKVM  180
FVDWLDMDCM GGGGGPPGAA AAAAAPGLGA AAGVTSTGDD QVTMDGSASG RADVSLHGTF  240
GDSGGAGCWE FHESFDQMQA AGFCDLLSSI GEYYFGLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26111183109B-MYB
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G496770
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G496770_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0410190.0BT041019.1 Zea mays full-length cDNA clone ZM_BFc0166P09 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141302.10.0uncharacterized protein LOC100273393
TrEMBLB4FV810.0B4FV81_MAIZE; MYB transcription factor
STRINGGRMZM2G496770_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP170737109
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.14e-57myb domain protein 19