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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GRMZM2G479110_P01 |
Common Name | cl3986_1, Zm.3355 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family |
ARR-B |
Protein Properties |
Length: 676aa MW: 73063.2 Da PI: 6.3096 |
Description |
ARR-B family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GRMZM2G479110_P01 | genome | MaizeSequence | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | G2-like | 89.6 | 2.7e-28 | 212 | 265 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+ Lt+e+v+SHLQkYRl
GRMZM2G479110_P01 212 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKRILELMNVERLTRENVASHLQKYRL 265
79*******************.********************************8 PP
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2 | Response_reg | 76.7 | 8.2e-26 | 23 | 131 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS
Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90
vl vdD+p+ +++l+++l++ +y +v+++ ++ al +l++++ +Dl++ D+ mp+mdG++ll+ e++lp+i+++ +ge +++ + +
GRMZM2G479110_P01 23 VLAVDDDPVCLKVLENLLRRCQY-HVTTTNQAVVALSMLRQNRdlFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSVNGETKTVMKGI 112
799********************.***************99999********************87754.558******************* PP
HTTESEEEESS--HHHHHH CS
Response_reg 91 kaGakdflsKpfdpeelvk 109
Ga d+l Kp+ eel++
GRMZM2G479110_P01 113 THGACDYLLKPVRLEELRN 131
*****************97 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0000160 | Biological Process | phosphorelay signal transduction system |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009414 | Biological Process | response to water deprivation |
GO:0010082 | Biological Process | regulation of root meristem growth |
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process |
GO:0031537 | Biological Process | regulation of anthocyanin metabolic process |
GO:0048367 | Biological Process | shoot system development |
GO:0080022 | Biological Process | primary root development |
GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway |
GO:0080113 | Biological Process | regulation of seed growth |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 676 aa
Download sequence Send
to blast |
MRPEERDAAV GRVRDQFPVG MRVLAVDDDP VCLKVLENLL RRCQYHVTTT NQAVVALSML 60 RQNRDLFDLV ISDVHMPDMD GFKLLELVGL EMDLPVIMLS VNGETKTVMK GITHGACDYL 120 LKPVRLEELR NIWQHVVRRK FSNCDRANND GYEECNRPSN ADFDLAHSQI TAGPPDQSGR 180 PSKKRKEYHS EEEDEGEESN GQDNDDPSAP KKPRVVWSVE LHRKFVAAVN QLGIDKAVPK 240 RILELMNVER LTRENVASHL QKYRLYLKRL SAVASQQASI VAALGGNDPF MRMSAFEGLH 300 GYQSFVSSAA LPSFSPQGLL NRNNPASFAI QGVSASRPIQ IATGNTTMSH SIGDPNDKYH 360 LSLPGTSCLQ GNLAQGLPTP VGQVQLPQKW IHEETDDLST ILSASGRANS GVPGTLQSVT 420 NSHLLQQGFV ERRQDKVVIQ PSSSASSDRP EGTVGVSSSL MDSCATQQRV VPLSAFSSSA 480 SPMNGSFCSN GVAELGATSS GGTSIFPSND LRIERDSKVG ASSFGSVILL SPDTVPNQKY 540 LNFGGGSDLR SNMEGGNAGN LLNPKLLWSC LPASQPPNLI GSHHPMSQRL NLGGSMVRQT 600 TASASAAAPQ TRIDMFISGD APKSASDLSF PKVHSELSSS SCSFDGLLNS IIKVEKDDAS 660 FSDDLGCDLY SLGACI
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Expression -- UniGene
? help Back to Top |
UniGene ID |
E-value |
Expressed in |
Zm.3355 | 0.0 | aerial organ| endosperm| glume| meristem| root| tassel |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |