PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G469551_P01
Common NameLOC100192627
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HD-ZIP
Protein Properties Length: 835aa    MW: 91695.4 Da    PI: 6.1122
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G469551_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.11.5e-182279457
                       -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         ++t+eq+e+Le++++++++ps ++r++L +++    +++ +q+kvWFqNrR ++k+
  GRMZM2G469551_P01 22 YVRYTPEQVEALERVYAECPKPSSARRQQLLRECpilsNIEAKQIKVWFQNRRCRDKQ 79
                       6789***************************************************996 PP
2START157.21.3e-491583662205
                        HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEE CS
              START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..gal 91 
                        +aee+++e+++ka+ ++  Wv+++ +++g+++  +++ s++ +g a+ra+g+v  ++++ ve+l d++  W +++++ e++  +  g  g++
  GRMZM2G469551_P01 158 IAEETLTEFLSKATGTAIDWVQMPGMKPGPDSFGIVTISHGGRGVAARACGLVNLEPTKIVEILKDRP-SWFRDCRSLEVYTMLPAGngGTI 248
                        6899******************************************************9999999999.****************9999*** PP

                        EEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS
              START  92 qlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179
                        +l +++++a+++lvp Rdf+++Ry+ ++++g++v++++S++   + ++   ++++vRae+lpSg+l++++++g+s v +v+h dl+++++++
  GRMZM2G469551_P01 249 ELVYMQMYAPTTLVPaRDFWTLRYTTTMEDGSLVVCERSLSGSGDGQSaatTQQFVRAEMLPSGYLVRQCEGGGSIVRIVDHLDLDAWSVPE 340
                        *****************************************98888877889**************************************** PP

                        HHHHHHHHHHHHHHHHHHHHTXXXXX CS
              START 180 llrslvksglaegaktwvatlqrqce 205
                        +lr+l++s+++ ++k+++ +l+++++
  GRMZM2G469551_P01 341 VLRPLYESSRVVAQKMTTTALRHLRQ 366
                        ********************999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-18379IPR009057Homeodomain-like
PROSITE profilePS5007115.4181680IPR001356Homeobox domain
SMARTSM003894.6E-161884IPR001356Homeobox domain
CDDcd000863.61E-162181No hitNo description
SuperFamilySSF466892.18E-162182IPR009057Homeodomain-like
PfamPF000463.4E-162279IPR001356Homeobox domain
CDDcd146864.96E-673112No hitNo description
PROSITE profilePS5084826.441148376IPR002913START domain
CDDcd088753.51E-75152368No hitNo description
SuperFamilySSF559614.12E-34153370No hitNo description
Gene3DG3DSA:3.30.530.201.4E-20156343IPR023393START-like domain
SMARTSM002343.5E-36157367IPR002913START domain
PfamPF018521.9E-47158366IPR002913START domain
PfamPF086704.3E-50692834IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 835 aa     Download sequence    Send to blast
MRSGSSDGGG GYEKSGMDTG KYVRYTPEQV EALERVYAEC PKPSSARRQQ LLRECPILSN  60
IEAKQIKVWF QNRRCRDKQR NESSRLQSVN RKLTAMNKLL MEENERLQKQ VSQLVHENAY  120
MKQQLQNPSL ATDASCESNA TTPANLRDAS NPSGLLAIAE ETLTEFLSKA TGTAIDWVQM  180
PGMKPGPDSF GIVTISHGGR GVAARACGLV NLEPTKIVEI LKDRPSWFRD CRSLEVYTML  240
PAGNGGTIEL VYMQMYAPTT LVPARDFWTL RYTTTMEDGS LVVCERSLSG SGDGQSAATT  300
QQFVRAEMLP SGYLVRQCEG GGSIVRIVDH LDLDAWSVPE VLRPLYESSR VVAQKMTTTA  360
LRHLRQIAQE TSGEVVYALG RQPAVLRTFS QRLSRGFNDA ISGFNDDGWS VMCGDGMEDV  420
IIACNSKKIR SSSNPATGFG APGPGGIICA KASMLLQSVP PAVLVRFLRE HRSEWADYNF  480
DAYSASALKT SPCSLPGLRP MRFSGSQIIM PLAHTVENEE ILEVVRLEGQ TLTHDEGLLS  540
RDIHLLQLCT GMDEKSMGSC FQLVFAPIDE LFPDDAPLVS SGFRVIPLDI KTDGPPSGRT  600
LDLASSLEVG ATTQQVAGNG SQDVCNLRSV LTIAFQFPYE THLQDTVAAM ARQYVRSIVS  660
AVQRVSMAIS PSHSGLNTAG QKLISGSPEA ATLVRWICQS YRYHLGVDLV SHSDQAGESL  720
LRMFWDHQDA VLCCSFKEKP VFTFGNQMGV DMLETTLVAL QDLTLDKIFD EPGRKALHAE  780
VPKLMEQGYA YLPAGVCLSG MGRHVSYEQA VAWKVLGEDG NVHCLAFCFV NWSFI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.188570.0ear| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G469551
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G469551_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001316502.10.0uncharacterized protein LOC100192627
SwissprotA2Z8L40.0HOX9_ORYSI; Homeobox-leucine zipper protein HOX9
TrEMBLA0A317Y1S70.0A0A317Y1S7_MAIZE; Homeobox-leucine zipper protein HOX9
STRINGGRMZM2G469551_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Representative plantOGRP6511671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein