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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G463730_P02 | ||||||||
Common Name | LOC103644106, Zm.9110 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | FAR1 | ||||||||
Protein Properties | Length: 1202aa MW: 135849 Da PI: 6.4912 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 75.6 | 1e-23 | 436 | 522 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +YA+++GFsvrk k+ +n +++r +vCskeg+r ++ + ++++++ e rtgC+a++++k + + k++vt+++ +HnH+l GRMZM2G463730_P02 436 EFYANYAETAGFSVRKGWLDKTAKNV-TKSRAYVCSKEGFRPRSASI--ESKKPSLEARTGCQAHMTIKITASTKYVVTEFVADHNHDLE 522 6********************95555.99************999877..999************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51152 | 9.31 | 312 | 372 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF03101 | 4.2E-21 | 436 | 522 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.5E-20 | 622 | 713 | IPR018289 | MULE transposase domain |
Pfam | PF04434 | 1.1E-4 | 888 | 932 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 9.693 | 888 | 935 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 5.8E-4 | 910 | 937 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 1202 aa Download sequence Send to blast |
MVDRAAARAQ AVSSDPPPPA LLEPDPRLSQ PGAADGQEVA SAGATAGPPS LPQASDAEED 60 ALASPAGQPG ERCRAMMEVV AKDGAWKVTK LVVEHCHELQ VAPGHVAVTV PALGMEFDSV 120 DDAKGFYYGY GEQVGFKARM GSNRRSVGDG EKILQRFLCW KGNYANRSRC KDSDAGKETD 180 EVLEGLSAAA GKRKREPYKT RSRNPGRSTE VIEVEKGVGL GGAGNGLELD NGRRSRRGRS 240 KKAEVEHGED SVVGFEAEEV AKAVSDADEE EDEGDEDQEA AEQEVEVEVK EQRARGRPRK 300 AVMEDNALQA RVLRELGVRA LQYNNEERKK ILNKYRSKRQ SRSVSSRPTK ISSRQALAER 360 RKRGNGGRFL SSEEQPLPSE RRSKRLKKQN LKMQKAESKE DETMEAEPDP EIDVVPGPGG 420 EPKVGMVFLN EDKAYEFYAN YAETAGFSVR KGWLDKTAKN VTKSRAYVCS KEGFRPRSAS 480 IESKKPSLEA RTGCQAHMTI KITASTKYVV TEFVADHNHD LETPLVDIQI LKSEKLLAKV 540 QQPPDPPKVV LIPNEYKNYT RTKRTKNMQL GDTQAICEYL QRMKGENPSF FYAIQVDEDD 600 MFTNVFWADA KSIMDYNYFG DVVCVDTRYC TSDYGRPLLL FTGVNHHNQL IIFGSALIYD 660 DSAQSFRWLF ETFKSAMSGK QPKTVLTDQS AALSDAVSSW PGTIHRFSLL HLYLNATKIS 720 RDTLQGLETF ASDFSRWLYE YEEDNFYSSW EILSEKYNIK DNEWFCKLYE DRERWALPYG 780 RDTFCADIAT TLRRDNTNTI LTDLIKPEID LQNFFNNYDK FLEEKRLAEQ QADYLGAQIT 840 QRVAPLHLLW QAANLYTPTL FEMFRMEYEQ ISKCVVYSCG EIGPISEYQV TVKDRPQGQF 900 VRFDSTECMV VCSCKKFEFM GLLCCHVLKI LDLRNIKELP RHYILKRWRK DAQSESPENY 960 GFAAIDEDPK FSLSKRYNAL YRNLYKIAAK ASESVEAYAF LENQYEQLVE QVEVLLQAKL 1020 HDKSSLSTVL KGNQPNMLNS EVNSSEHRRA TGKKIKNVEV RRQQQSLDPN KKKKGRQVLL 1080 EPEIEIPLRV EPPTVSNDIQ NHLRTTNQFL APSHMMQAPY VAQQFGLGSL QGFPGMSPFG 1140 QIQEPTPLQQ PHLQPPSFHS GPQITQAPPP DIQSLQFLSS NPQLGHQTTD QGQYTIPVWD 1200 FL |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G463730 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G463730_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008665517.1 | 0.0 | protein FAR1-RELATED SEQUENCE 4 isoform X1 | ||||
TrEMBL | A0A1D6L6J8 | 0.0 | A0A1D6L6J8_MAIZE; Protein FAR1-RELATED SEQUENCE 5 | ||||
STRING | GRMZM2G463730_P02 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Representative plant | OGRP13908 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 5e-95 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G463730_P02 |
Entrez Gene | 103644106 |