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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G461907_P01 | ||||||||
Common Name | EREB123 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 231aa MW: 25238.1 Da PI: 8.2506 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 41.4 | 3.5e-13 | 147 | 190 | 1 | 49 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaa 49 ++y+GV +++ rgr+v++ +d+ + kr +lg f+taeeAa++++ GRMZM2G461907_P01 147 PRYRGVLRRR-RGRYVVRTCDW-----KdKRMWLGMFDTAEEAARRYDSE 190 68****8666.8******9999.....56******************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 11.403 | 1 | 33 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 0.0074 | 1 | 39 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-7 | 1 | 34 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-10 | 1 | 34 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.0E-8 | 147 | 188 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-13 | 148 | 205 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 8.7E-14 | 148 | 210 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.147 | 148 | 204 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-17 | 148 | 205 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-6 | 149 | 160 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-6 | 170 | 186 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MWLGTFDSAE EAVRRYDSET RRLRGPSAIT NFPVTSDDRV PLPTSSLHAV DEHSFAADES 60 QPVVGSPVST TPPPKPVDAA AETLSTFFSS DKADAGGGAE AAAGPRKFVM EIHMEEHRPR 120 CNATAPTGRV AGGGKRKVAV AGTPAEPRYR GVLRRRRGRY VVRTCDWKDK RMWLGMFDTA 180 EEAARRYDSE TRRLRVPSAI TNFPATSDDR VSLPAPSLHA VDEHSFAANE S |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 134 | 156 | KRKVAVAGTPAEPRYRGVLRRRR |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G461907 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G461907_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727713 | 0.0 | KJ727713.1 Zea mays clone pUT5652 AP2-EREBP transcription factor (EREB123) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020396639.1 | 5e-95 | AP2/ERF and B3 domain-containing protein Os05g0549800 | ||||
TrEMBL | A0A060D794 | 1e-166 | A0A060D794_MAIZE; AP2-EREBP transcription factor (Fragment) | ||||
STRING | GRMZM2G461907_P01 | 1e-167 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13133 | 23 | 32 |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50640.1 | 6e-11 | ethylene responsive element binding factor 3 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G461907_P01 |