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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G460869_P01 | ||||||||
Common Name | LOC103650014 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB | ||||||||
Protein Properties | Length: 283aa MW: 31930.7 Da PI: 7.1209 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.5 | 4.6e-16 | 56 | 101 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W Ede+l+++v+q+G+++W+ I++++ gR++k+c++rw + GRMZM2G460869_P01 56 RGHWRSFEDEKLKELVAQYGPKNWSHISKKLE-GRSGKSCRLRWINQ 101 7899999*************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 47.6 | 3.9e-15 | 110 | 152 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++ E+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ GRMZM2G460869_P01 110 TFSMVEEERLLVAHHAYGTK-WSLIARLFP-GRTDNAVKNHWHVM 152 57788***************.*********.***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.908 | 51 | 106 | IPR017930 | Myb domain |
SMART | SM00717 | 7.0E-13 | 55 | 104 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 9.73E-27 | 56 | 153 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.0E-14 | 56 | 101 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-22 | 57 | 109 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.46E-13 | 63 | 100 | No hit | No description |
SMART | SM00717 | 7.4E-11 | 107 | 155 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 16.288 | 107 | 157 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.6E-12 | 110 | 151 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-17 | 110 | 156 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.84E-9 | 115 | 153 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025541 | anatomy | bundle sheath cell | ||||
PO:0025589 | anatomy | leaf lamina tip | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MDHFSPALPP THDLVPFQEE NKHIFITEEA YDGHVEEHDG SNSHDGISNQ GKHIVRGHWR 60 SFEDEKLKEL VAQYGPKNWS HISKKLEGRS GKSCRLRWIN QLDPHLNHDT FSMVEEERLL 120 VAHHAYGTKW SLIARLFPGR TDNAVKNHWH VMMARKSRAI QGIKMMSSSN PSPSAKESPH 180 FMPTININQN YGKNMHSQLD AQVEVATTPH IYHAIEFKNS LSTNTTNLSI EGASNMDPHV 240 KTPMQSNFIA ITHSGFSTPS LATEKSGDKF TSPFFDFLGV GDA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-28 | 54 | 156 | 5 | 107 | B-MYB |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G460869 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G460869_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1D6MQP4 | 0.0 | A0A1D6MQP4_MAIZE; Myb domain protein 110 | ||||
STRING | GRMZM2G460869_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 1e-52 | myb domain protein 105 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G460869_P01 |
Entrez Gene | 103650014 |